Factsheet for VIT_15s0048g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030420_P001	Maize	cytosol	20.7	54.15
GSMUA_Achr5P11340_001	Banana	cytosol	58.76	52.77
GSMUA_Achr1P02510_001	Banana	cytosol	57.6	51.11
VIT_16s0022g01820.t01	Wine grape	nucleus	62.27	51.1
GSMUA_Achr5P10040_001	Banana	nucleus	53.92	50.95
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	56.76	48.23
TraesCS3A01G264600.1	Wheat	cytosol	55.43	48.19
TraesCS3B01G297900.1	Wheat	cytosol	55.43	48.12
TraesCS3D01G264700.2	Wheat	cytosol	55.26	47.97
OQU87349	Sorghum	golgi, vacuole	56.43	47.27
TraesCS1A01G378900.1	Wheat	cytosol	51.92	45.94
TraesCS1D01G386100.1	Wheat	cytosol	52.09	45.81
Zm00001d043831_P001	Maize	cytosol, mitochondrion	55.93	45.64
TraesCS1B01G400200.1	Wheat	cytosol	51.75	45.52
HORVU3Hr1G063620.1	Barley	plastid	55.09	44.24
Os05t0552900-01	Rice	cytosol	53.92	44.19
HORVU1Hr1G083810.7	Barley	cytosol	50.42	44.15
Os02t0126300-01	Rice	plasma membrane	40.73	43.65
Solyc01g091380.2.1	Tomato	plastid	53.76	43.28
PGSC0003DMT400033224	Potato	nucleus	54.42	43.18
VIT_13s0084g00080.t01	Wine grape	cytosol, nucleus, plastid	39.9	42.53
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	39.4	42.14
AT3G60840.1	Thale cress	cytosol	47.41	41.95
KRH40591	Soybean	nucleus	48.91	41.8
Zm00001d006888_P001	Maize	cytosol	18.53	41.57
CDY62713	Canola	cytosol	46.58	40.79
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.73	40.68
VIT_01s0010g03540.t01	Wine grape	cytosol	38.4	40.56
CDX89081	Canola	cytosol	45.91	40.09
VIT_01s0011g06330.t01	Wine grape	nucleus	39.9	39.9
Bra014467.1-P	Field mustard	cytosol	43.07	39.81
Zm00001d053956_P001	Maize	nucleus	39.07	39.26
TraesCS6A01G089500.2	Wheat	nucleus	35.89	39.23
TraesCS6B01G111900.1	Wheat	nucleus	35.89	39.16
TraesCSU01G016800.1	Wheat	nucleus	35.56	38.73
Zm00001d015096_P002	Maize	nucleus	38.9	38.13
Zm00001d046884_P001	Maize	plastid	22.7	28.33

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:100257496	wikigene:100257496	MapMan:13.4.3.5	ProteinID:CBI38858	ProteinID:CBI38858.3
ncoils:Coil	UniProt:D7U7S9	EMBL:FN596739	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	EntrezGene:LOC100257496	wikigene:LOC100257496	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321
PANTHER:PTHR19321:SF7	UniParc:UPI0001BE5086	ArrayExpress:VIT_15s0048g00860	EnsemblPlantsGene:VIT_15s0048g00860	EnsemblPlants:VIT_15s0048g00860.t01	RefSeq:XP_002273473
RefSeq:XP_002273473.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:+:15025715..15030969

Molecular Weight (calculated)

68606.0 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.395

Length

599 amino acids

Sequence
(BLAST)

001: MNNHHSDRLQ QIETTCASLL KDLQSIWDEV GEPNIERDEM LLELEQECLE AYKRKVSHAK KSRAQLRQAI ADSEAELADI CSAMGEGPVN VRQFDQNAGG
101: GLKEELKTIV STLEEMRKLK CERKKQFVEV LDQLLNISKE LCKPREDNLC KIVMDETDLS LKRLHELHRL LLELQDEKSN RVKQVLAHLK TLDSLCKVLG
201: LDFKHTVVEI HPSMDDSIGL KNLSSDTIDK LAATILSLRE VKTQRMHKLR DLAASMLELW SLMDTPIKEQ QMFQNVTSNI AASEHEITEP NTLSLDFINY
301: VEAEVSRLEQ LKSSKMKELI LKKRTELEEI CSRIHVVSEA YIPIEHSIEA IESGAMEPTY LLEQVELQIA KVKEEAFSRK EILDKVVKWL AACDEECWLE
401: EYNRDGNRYN AGRGAHVHLK RAEKARALVS KIPAMTEALT LKAKAWEEER GIEFLYDGVQ LLSMLDQYNF LRQEKEQERQ RQREQKRLQG QLIAEQEALF
501: GSKPSPSKSG KKLSRISTIG AANRRFSHGG MMLQAPNPEK AALHSCPTKK DETYYICLHF SVLITVCFPI DLFASKFMQL LVYILNLNLI ISLCLEAHL

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.