Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G378900.1 | |
| TraesCS1B01G400200.1 | |
| TraesCS1D01G386100.1 | |
| TraesCS2A01G194000.1 | nucleus |
| TraesCS2A01G196600.1 | |
| TraesCS2A01G320000.1 | nucleus |
| TraesCS2B01G212800.1 | nucleus |
| TraesCS2B01G224200.1 | |
| TraesCS2B01G363300.1 | nucleus |
| TraesCS2D01G193800.1 | nucleus |
| TraesCS2D01G204600.1 | |
| TraesCS2D01G343300.1 | nucleus |
| TraesCS3A01G264600.1 | |
| TraesCS3B01G297900.1 | |
| TraesCS3D01G264700.2 | |
| TraesCS4A01G058600.1 | nucleus |
| TraesCS4B01G246100.1 | nucleus |
| TraesCS4D01G245500.2 | nucleus |
| TraesCS5A01G142400.1 | nucleus |
| TraesCS5B01G141100.1 | nucleus |
| TraesCS5D01G149700.1 | nucleus |
| TraesCS6A01G089500.2 | |
| TraesCS6B01G111900.1 | |
| TraesCSU01G016800.1 | |
| TraesCSU01G188700.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G089500.2 | Wheat | nucleus | 94.17 | 94.34 |
| TraesCSU01G016800.1 | Wheat | nucleus | 93.62 | 93.45 |
| Os02t0126300-01 | Rice | plasma membrane | 61.93 | 60.82 |
| EES06214 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 62.48 | 58.63 |
| Zm00001d053956_P001 | Maize | nucleus | 60.11 | 55.37 |
| Zm00001d015096_P002 | Maize | nucleus | 60.47 | 54.34 |
| Bra010069.1-P | Field mustard | nucleus | 37.52 | 38.22 |
| CDX86911 | Canola | nucleus | 37.52 | 38.22 |
| CDY00270 | Canola | nucleus | 37.16 | 37.85 |
| CDX87240 | Canola | nucleus | 36.61 | 37.15 |
| AT5G62250.1 | Thale cress | nucleus | 36.98 | 36.98 |
| Bra035900.1-P | Field mustard | nucleus | 36.43 | 36.97 |
| CDY16786 | Canola | nucleus | 36.43 | 36.83 |
| VIT_15s0048g00860.t01 | Wine grape | cytosol, nucleus, plasma membrane | 39.16 | 35.89 |
| TraesCS7B01G304900.2 | Wheat | cytosol | 37.34 | 35.34 |
| TraesCS1B01G400200.1 | Wheat | cytosol | 43.53 | 35.1 |
| TraesCS3B01G297900.1 | Wheat | cytosol | 44.08 | 35.07 |
| KRH38719 | Soybean | cytosol | 40.44 | 34.47 |
| VIT_16s0022g01820.t01 | Wine grape | nucleus | 45.36 | 34.11 |
| AT5G51600.1 | Thale cress | cytosol | 42.99 | 33.38 |
| Bra028266.1-P | Field mustard | cytosol | 42.62 | 33.1 |
| Bra023930.1-P | Field mustard | cytosol | 42.62 | 33.0 |
| TraesCS1B01G267200.2 | Wheat | cytosol | 34.61 | 32.99 |
| PGSC0003DMT400070431 | Potato | nucleus | 41.35 | 32.71 |
| TraesCS6B01G311200.1 | Wheat | cytosol | 35.15 | 32.66 |
| PGSC0003DMT400079660 | Potato | cytosol | 43.9 | 32.35 |
| KRH34346 | Soybean | cytosol | 43.53 | 32.08 |
| KRG92454 | Soybean | nucleus | 42.26 | 31.91 |
| Solyc03g007130.2.1 | Tomato | nucleus | 42.99 | 31.85 |
| TraesCS7B01G190000.1 | Wheat | endoplasmic reticulum, golgi | 35.52 | 31.71 |
| AT3G60840.1 | Thale cress | cytosol | 38.07 | 30.87 |
| Bra014467.1-P | Field mustard | cytosol | 36.43 | 30.86 |
| CDY62713 | Canola | cytosol | 37.89 | 30.41 |
| Solyc11g072280.1.1 | Tomato | extracellular | 42.26 | 30.09 |
| TraesCS5B01G232400.1 | Wheat | nucleus | 32.24 | 30.05 |
| CDX89081 | Canola | cytosol | 37.52 | 30.03 |
| TraesCS4B01G230500.2 | Wheat | nucleus | 33.33 | 29.95 |
| KRH09228 | Soybean | cytosol | 28.78 | 29.53 |
| Solyc01g091380.2.1 | Tomato | plastid | 38.62 | 28.49 |
| PGSC0003DMT400033224 | Potato | nucleus | 38.43 | 27.95 |
| KRH40591 | Soybean | nucleus | 35.34 | 27.67 |
| TraesCS4B01G051200.1 | Wheat | nucleus | 30.97 | 27.51 |
| TraesCS7B01G158100.1 | Wheat | cytosol, mitochondrion, nucleus | 28.05 | 26.1 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G111900.1 | EnsemblPlantsGene:TraesCS6B01G111900 | Gene3D:1.20.58.1520 | GO:GO:0000226 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:MAP65_Ase1_PRC1 |
| ncoils:Coil | PANTHER:PTHR19321 | PANTHER:PTHR19321:SF13 | PFAM:PF03999 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr6B:+:93779848..93783966
Molecular Weight (calculated)
62156.8 Da
IEP (calculated)
5.410
GRAVY (calculated)
-0.756
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRRELLLR ELREAWDEVG EAEEDRREAL RALEEDCLAV YRAKVAQVRQ QGARLRAEIA AALAELAALR AAVGDDPRSA APTSAGSLRE ELRAIAPKLE
101: EVRQRRDEMC RQIAEVTELI DRLRQEMRPG ERPPPPRVDA DPDNLTMNRL QELRAHLRHL QSEKENRIKK VAELTSSLHA SSSVLGMDPR EITTSLQEAG
201: AVAGDISDGA IARLESEAER LREAKRGRMQ RLQDLVVAML ELWSLMDTPQ EEQSRFQGVA CNVAASEDEI TEPGALSAGA IGEVEAEVVR LEGLKGRRMK
301: DLLARKRGEL REIRLRARIV SAQQEEEDGG EEVVSDDGCA DAAERSLVLE RLDARISEAR DEEFSRKEVL ERMERWQAAL EEESWLEEYN RNKNRYNVGK
401: GMHLVLKRAE KARTLVNKMP AMAEALTAKV VAWEKDRGTK FLYDGEGLLD MLEEYDNMRK DKEQEKKRQR DQRRLQGQST VESPVARALQ KNLKNVTRTL
501: SMGSSKKMIV SASSSSLSSP RPITPSYLKS SFPPRRSNDR QMVSQDSFE
101: EVRQRRDEMC RQIAEVTELI DRLRQEMRPG ERPPPPRVDA DPDNLTMNRL QELRAHLRHL QSEKENRIKK VAELTSSLHA SSSVLGMDPR EITTSLQEAG
201: AVAGDISDGA IARLESEAER LREAKRGRMQ RLQDLVVAML ELWSLMDTPQ EEQSRFQGVA CNVAASEDEI TEPGALSAGA IGEVEAEVVR LEGLKGRRMK
301: DLLARKRGEL REIRLRARIV SAQQEEEDGG EEVVSDDGCA DAAERSLVLE RLDARISEAR DEEFSRKEVL ERMERWQAAL EEESWLEEYN RNKNRYNVGK
401: GMHLVLKRAE KARTLVNKMP AMAEALTAKV VAWEKDRGTK FLYDGEGLLD MLEEYDNMRK DKEQEKKRQR DQRRLQGQST VESPVARALQ KNLKNVTRTL
501: SMGSSKKMIV SASSSSLSSP RPITPSYLKS SFPPRRSNDR QMVSQDSFE
001: MIRNSTEQFS RIETTCGLLL RQLQEIWNEM GETEDEKDAS LADIEKECLS VYKRKVEEAS RGKANLLKEI AVGRAEIAAI GSSMGGQEIH SNSRLGENLK
101: EELENVNVQL DGLRKRKAER MIRFNEVIDQ LLKLSLQLGN PTDYLKKFAA EETDLSLQRL EELRSQLGEL QNEKSKRLEE VECLLKTLNS LCSVLGEDFK
201: GMIRGIHSSL VDSNTRDVSR STLDKLDMMI VNLREAKLQR MQKVQDLAVS LLELWNLLDT PAEEQKIFHN VTCSIALTES EITEANILSV ASIKRVEDEV
301: IRLSKIKITK IKEVILRKRL ELEEISRKMH MATEVLKSEN FSVEAIESGV KDPEQLLEQI DSEIAKVKEE ASSRKEILEK VEKWMSACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RLLVNKLPGM VEALTAKVTA WENERGNEFL YDGVRVLSML GQYKTVWEEK EHEKQRQRDM KKLHGQLITE QEALYGSKPS
501: PNKSGKKPLR TPVNAAMNRK LSLGGAMLHQ SLKHEKATLN SKRTKYYDQN ATSRRDSALP TLSGRRNSEL PGRIRSKNVP VAGKAARSPM LRKPLSPVTS
601: NILNSPEDHH KDAYTTKERI LTPKTNEEKK RAVPTTPAAS VAMTEATTPF TPAVEKRMDE EDVIVEYSFE EVRAGFC
101: EELENVNVQL DGLRKRKAER MIRFNEVIDQ LLKLSLQLGN PTDYLKKFAA EETDLSLQRL EELRSQLGEL QNEKSKRLEE VECLLKTLNS LCSVLGEDFK
201: GMIRGIHSSL VDSNTRDVSR STLDKLDMMI VNLREAKLQR MQKVQDLAVS LLELWNLLDT PAEEQKIFHN VTCSIALTES EITEANILSV ASIKRVEDEV
301: IRLSKIKITK IKEVILRKRL ELEEISRKMH MATEVLKSEN FSVEAIESGV KDPEQLLEQI DSEIAKVKEE ASSRKEILEK VEKWMSACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RLLVNKLPGM VEALTAKVTA WENERGNEFL YDGVRVLSML GQYKTVWEEK EHEKQRQRDM KKLHGQLITE QEALYGSKPS
501: PNKSGKKPLR TPVNAAMNRK LSLGGAMLHQ SLKHEKATLN SKRTKYYDQN ATSRRDSALP TLSGRRNSEL PGRIRSKNVP VAGKAARSPM LRKPLSPVTS
601: NILNSPEDHH KDAYTTKERI LTPKTNEEKK RAVPTTPAAS VAMTEATTPF TPAVEKRMDE EDVIVEYSFE EVRAGFC
Arabidopsis Description
MAP65-465-kDa microtubule-associated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.