Factsheet for TraesCSU01G016800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G378900.1
TraesCS1B01G400200.1
TraesCS1D01G386100.1
TraesCS2A01G194000.1	nucleus
TraesCS2A01G196600.1
TraesCS2A01G320000.1	nucleus
TraesCS2B01G212800.1	nucleus
TraesCS2B01G224200.1
TraesCS2B01G363300.1	nucleus
TraesCS2D01G193800.1	nucleus
TraesCS2D01G204600.1
TraesCS2D01G343300.1	nucleus
TraesCS3A01G264600.1
TraesCS3B01G297900.1
TraesCS3D01G264700.2
TraesCS4A01G058600.1	nucleus
TraesCS4B01G246100.1	nucleus
TraesCS4D01G245500.2	nucleus
TraesCS5A01G142400.1	nucleus
TraesCS5B01G141100.1	nucleus
TraesCS5D01G149700.1	nucleus
TraesCS6A01G089500.2
TraesCS6B01G111900.1
TraesCSU01G016800.1
TraesCSU01G188700.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	TraesCS2A01G196600.1	AT2G22640.1	25262777
AT5G51600.1	TraesCS2B01G224200.1	AT2G22640.1	25262777
AT5G51600.1	TraesCS2D01G204600.1	AT2G22640.1	25262777
AT5G51600.1	TraesCS2A01G194000.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS2B01G212800.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS2D01G193800.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS4A01G058600.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS4B01G246100.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS4D01G245500.2	AT3G19590.1	25262777
AT5G51600.1	TraesCS2A01G194000.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS2B01G212800.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS2D01G193800.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS4A01G058600.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS4B01G246100.1	AT3G19590.1	25262777
AT5G51600.1	TraesCS4D01G245500.2	AT3G19590.1	25262777
AT5G51600.1	TraesCS2A01G320000.1	AT3G25980.1	25262777
AT5G51600.1	TraesCS2B01G363300.1	AT3G25980.1	25262777
AT5G51600.1	TraesCS2D01G343300.1	AT3G25980.1	25262777
AT5G51600.1	TraesCS2A01G320000.1	AT3G25980.1	25262777
AT5G51600.1	TraesCS2B01G363300.1	AT3G25980.1	25262777
AT5G51600.1	TraesCS2D01G343300.1	AT3G25980.1	25262777
AT5G51600.1	TraesCS5A01G142400.1	AT5G05510.1	25262777
AT5G51600.1	TraesCS5B01G141100.1	AT5G05510.1	25262777
AT5G51600.1	TraesCS5D01G149700.1	AT5G05510.1	25262777
AT5G51600.1	TraesCSU01G188700.1	AT5G05510.1	25262777
AT5G51600.1	TraesCS5A01G142400.1	AT5G05510.1	25262777
AT5G51600.1	TraesCS5B01G141100.1	AT5G05510.1	25262777
AT5G51600.1	TraesCS5D01G149700.1	AT5G05510.1	25262777
AT5G51600.1	TraesCSU01G188700.1	AT5G05510.1	25262777
AT5G51600.1	TraesCS1A01G378900.1	AT5G51600.1	25262777
AT5G51600.1	TraesCS1B01G400200.1	AT5G51600.1	25262777
AT5G51600.1	TraesCS1D01G386100.1	AT5G51600.1	25262777
AT5G51600.1	TraesCS3A01G264600.1	AT5G51600.1	25262777
AT5G51600.1	TraesCS3B01G297900.1	AT5G51600.1	25262777
AT5G51600.1	TraesCS3D01G264700.2	AT5G51600.1	25262777
AT5G51600.1	TraesCS6A01G089500.2	AT5G51600.1	25262777
AT5G51600.1	TraesCS6B01G111900.1	AT5G51600.1	25262777
AT5G51600.1	TraesCSU01G016800.1	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G089500.2	Wheat	nucleus	94.18	94.53
TraesCS6B01G111900.1	Wheat	nucleus	93.45	93.62
Os02t0126300-01	Rice	plasma membrane	62.91	61.9
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.27	59.49
Zm00001d053956_P001	Maize	nucleus	60.36	55.7
Zm00001d015096_P002	Maize	nucleus	61.27	55.16
CDX86911	Canola	nucleus	38.0	38.78
Bra010069.1-P	Field mustard	nucleus	38.0	38.78
CDY00270	Canola	nucleus	37.64	38.4
AT5G62250.1	Thale cress	nucleus	37.09	37.16
Bra035900.1-P	Field mustard	nucleus	36.55	37.15
CDX87240	Canola	nucleus	36.55	37.15
CDY16786	Canola	nucleus	36.55	37.02
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	38.73	35.56
KRH38719	Soybean	cytosol	40.91	34.94
VIT_16s0022g01820.t01	Wine grape	nucleus	46.36	34.93
AT5G51600.1	Thale cress	cytosol	43.82	34.09
Bra028266.1-P	Field mustard	cytosol	43.45	33.8
Bra023930.1-P	Field mustard	cytosol	43.45	33.71
PGSC0003DMT400070431	Potato	nucleus	42.0	33.29
PGSC0003DMT400079660	Potato	cytosol	44.36	32.75
KRH34346	Soybean	cytosol	44.0	32.48
KRG92454	Soybean	nucleus	42.91	32.46
Solyc03g007130.2.1	Tomato	nucleus	43.45	32.25
Bra014467.1-P	Field mustard	cytosol	36.73	31.17
AT3G60840.1	Thale cress	cytosol	38.36	31.17
KRH09228	Soybean	cytosol	30.0	30.84
CDY62713	Canola	cytosol	38.18	30.7
Solyc11g072280.1.1	Tomato	extracellular	42.73	30.48
CDX89081	Canola	cytosol	37.82	30.32
Solyc01g091380.2.1	Tomato	plastid	39.09	28.9
KRH40591	Soybean	nucleus	36.36	28.53
PGSC0003DMT400033224	Potato	nucleus	38.91	28.34

Protein Annotations

EnsemblPlants:TraesCSU01G016800.1	EnsemblPlantsGene:TraesCSU01G016800	Gene3D:1.20.58.1520	GO:GO:0000226	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP65_Ase1_PRC1
ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF13	PFAM:PF03999	SEG:seg	MapMan:35.1

Description

No Description!

Coordinates

chrUn:-:19188648..19193401

Molecular Weight (calculated)

62063.5 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.755

Length

550 amino acids

Sequence
(BLAST)

001: MEPRRELLLR ELRDAWDEVG EAEEDRWEAL RALEEDCLAV YRAKVAQVRQ QGARLRAEIA AALAELAALR AAVGDDPPSA ARTSAGSLRE ELRAIAPELE
101: EVRQRRDEMC RQFAEVTELI DRLRQEMRPG ERPPPPFVDA DPENLTMNRL QELRAHLRHL QSEKDNRIKK MAELTSSLHA SSSVLGMDPQ EITTSLQEAG
201: AGAGDISDGA IARLESEAER LREAKRGRMQ RLQDLVVAML ELWSLMDTPP EEQSRFQGVA CNVAASEDEI TEPGALSATA IGEVEAEVAR LEGLKGRRMK
301: DLLARKRGEL REIRRRARII SAQEEEEDGG GDEVVSDDGC ADAAERSLVL ERLDARISEA RDEEFSRKEV LERMEKWQVA LEEESWLEEY NRNKNRYNVG
401: KGMHLVRKRA EKARALVNKM PAMAEALMAK VVAWEKDRGA KFLYDGEGLL DMLEDYDNTR KEKEQEKKRQ RDQRKLQGQS TVESPVARAL QKNLKNVTRT
501: LSMGGSKKMI VSASSSSLSS PRPITPSYLK SSFSPRRSDD GQMVSQDSFE

Best Arabidopsis Sequence Match ( AT3G60840.1 )
(BLAST)

001: MIRNSTEQFS RIETTCGLLL RQLQEIWNEM GETEDEKDAS LADIEKECLS VYKRKVEEAS RGKANLLKEI AVGRAEIAAI GSSMGGQEIH SNSRLGENLK
101: EELENVNVQL DGLRKRKAER MIRFNEVIDQ LLKLSLQLGN PTDYLKKFAA EETDLSLQRL EELRSQLGEL QNEKSKRLEE VECLLKTLNS LCSVLGEDFK
201: GMIRGIHSSL VDSNTRDVSR STLDKLDMMI VNLREAKLQR MQKVQDLAVS LLELWNLLDT PAEEQKIFHN VTCSIALTES EITEANILSV ASIKRVEDEV
301: IRLSKIKITK IKEVILRKRL ELEEISRKMH MATEVLKSEN FSVEAIESGV KDPEQLLEQI DSEIAKVKEE ASSRKEILEK VEKWMSACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RLLVNKLPGM VEALTAKVTA WENERGNEFL YDGVRVLSML GQYKTVWEEK EHEKQRQRDM KKLHGQLITE QEALYGSKPS
501: PNKSGKKPLR TPVNAAMNRK LSLGGAMLHQ SLKHEKATLN SKRTKYYDQN ATSRRDSALP TLSGRRNSEL PGRIRSKNVP VAGKAARSPM LRKPLSPVTS
601: NILNSPEDHH KDAYTTKERI LTPKTNEEKK RAVPTTPAAS VAMTEATTPF TPAVEKRMDE EDVIVEYSFE EVRAGFC

Arabidopsis Description

MAP65-465-kDa microtubule-associated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.