Factsheet for VIT_01s0010g03540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074853	Potato	cytosol	74.6	71.09
KRG97427	Soybean	cytosol	68.96	70.96
Solyc05g015320.2.1	Tomato	extracellular	74.43	70.92
KRH31473	Soybean	cytosol	73.55	70.2
AT1G27920.1	Thale cress	nucleus	62.26	62.81
CDX84899	Canola	extracellular, nucleus, plastid	61.55	60.8
CDY27637	Canola	cytosol	61.02	60.7
GSMUA_Achr11P...	Banana	nucleus	61.02	60.17
Bra032853.1-P	Field mustard	cytosol	61.9	58.11
Os08t0531100-01	Rice	cytosol	48.5	56.35
EES15312	Sorghum	cytosol	56.79	54.48
TraesCS7D01G261100.1	Wheat	nucleus	56.26	54.07
TraesCS7A01G260100.2	Wheat	nucleus	56.08	53.9
TraesCS7B01G158100.1	Wheat	cytosol, mitochondrion, nucleus	56.08	53.9
Zm00001d031619_P001	Maize	nucleus	55.56	53.3
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	47.09	47.68
HORVU7Hr1G054130.4	Barley	mitochondrion	55.91	47.67
VIT_13s0084g00080.t01	Wine grape	cytosol, nucleus, plastid	44.97	45.37
Zm00001d049816_P001	Maize	nucleus	19.22	39.93
VIT_01s0011g06330.t01	Wine grape	nucleus	41.98	39.73
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	40.56	38.4
VIT_16s0022g01820.t01	Wine grape	nucleus	46.03	35.75

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:100264256	wikigene:100264256	MapMan:35.1	ProteinID:CBI27647	ProteinID:CBI27647.3
ncoils:Coil	UniProt:D7TAX4	EMBL:FN595754	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005819	GO:GO:0005856	GO:GO:0005874	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150
GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100264256	wikigene:LOC100264256	InterPro:MAP65_Ase1_PRC1
PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF3	UniParc:UPI0001BE31E5	ArrayExpress:VIT_01s0010g03540	EnsemblPlantsGene:VIT_01s0010g03540
EnsemblPlants:VIT_01s0010g03540.t01	RefSeq:XP_002271779	RefSeq:XP_002271779.2	RefSeq:XP_003631354	RefSeq:XP_003631354.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:20879398..20883794

Molecular Weight (calculated)

65083.6 Da

IEP (calculated)

6.021

GRAVY (calculated)

-0.673

Length

567 amino acids

Sequence
(BLAST)

001: MIWDEVGEDQ YEREKVLLDL EQECLEVYRR KVDSANISRA RLHQELAESE AEFTHLLLSL GERSLPGRPE KMAGTLKEQL DSITPVLREM QLRKEERMNQ
101: FRAVQGQIQK ISAEIAGQSE YDDSSSTVIV NENDLSLKKL EEYQIELQRL HKEKSDRLQR VEKYISTVQN LSTTLGMDSS VIITKVHPSL NELCGISKNI
201: SDSILAKLNS TVESLEEEKK TRLEKLHHLG KALTNLWNLM DTPYEDRQLF SHVTKLLSVS SAEISNPGSL TLDTIKQAEA EVERLDHLKA SKMKELFLKK
301: QIELEEICNR SHMEIPSQSE MDNIMNLINS GEIDHADLLM SMDEQISRAR EEASSRKTIM EKVEKWMLAR DEERWLEEYM RDENRYSVSR GAHRNLKRAE
401: RARITVNKLP ALVDLLIAKT KSWEEERTKV FLYDEVPLLA MLEEYNLSRQ EREEEKQRQR EKKKVQSQVV VEQENLFGSR PSTSSRRLSN MSLNGGFSTA
501: TALNRRLSLG IQQLGSNSIN SPTQGLSFIK EGKKAQGQKM SVRLSLVSHP REETASVVPT FSGPLSP

Best Arabidopsis Sequence Match ( AT1G27920.1 )
(BLAST)

001: MGSLQTPIEM RSSSLLDTSC GYLLRELQMI WDEVGEDKFE REKVLLDIEQ ECVEAYRRKV DHANVSRSRL HQELAESEAE LTHFLLCLGE RSVPGRPEKK
101: GGTLREQLDS IAPALREMRL RKDERVKQFR SVKGEIQKIS AEIAGRSTYE DSTRKITIDD NDLSNKKLEE YQNELHRLHD EKNERLQKVD IYICAIRDLS
201: ATLGTEASMI ITKIHPSLND LYGISKNISD DILKKLNGTV VSLEEEKHKR LEKLHHLGRA LSNLWNLMDA SYEDRQKFFH VIDLLSSAPS DVCAPGSITL
301: DIIQQAEAEV KRLDQLKASR IKELFIKKQK ELEDTCNMSH METPSTEMGN ITNLVDSGEV DHVDLLAAMD EKIARAKEEA ASRKGIIEKV DRWMLASDEE
401: RWLEEYDQDE NRYSVSRNAH RNLRRAERAR ITVSKISGLV ESILVKAKSW EVERQKVFLY NEVPLVAMLQ EYNKLRQEKE MEKQRLREMK KMSIPQPVAE
501: GDNFYMARPA SSNRRISNRS MNGGFGSGSP INRKYSGGFN NTNNNYTALG TSIRRESRKS EA

Arabidopsis Description

MAP65-865-kDa microtubule-associated protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.