Factsheet for PGSC0003DMT400074853

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015320.2.1	Tomato	extracellular	97.48	97.48
VIT_01s0010g03540.t01	Wine grape	cytosol	71.09	74.6
KRG97427	Soybean	cytosol	63.19	68.24
KRH31473	Soybean	cytosol	66.72	66.83
AT1G27920.1	Thale cress	nucleus	59.33	62.81
CDX84899	Canola	extracellular, nucleus, plastid	58.66	60.8
CDY27637	Canola	cytosol	57.98	60.53
GSMUA_Achr11P...	Banana	nucleus	55.8	57.74
Bra032853.1-P	Field mustard	cytosol	56.47	55.63
Os08t0531100-01	Rice	cytosol	45.55	55.53
EES15312	Sorghum	cytosol	52.1	52.45
Zm00001d031619_P001	Maize	nucleus	51.76	52.12
TraesCS7D01G261100.1	Wheat	nucleus	51.43	51.86
TraesCS7B01G158100.1	Wheat	cytosol, mitochondrion, nucleus	51.43	51.86
TraesCS7A01G260100.2	Wheat	nucleus	51.26	51.69
PGSC0003DMT400057428	Potato	cytosol	47.9	49.05
PGSC0003DMT400033471	Potato	cytosol	46.39	48.08
HORVU7Hr1G054130.4	Barley	mitochondrion	50.76	45.41
PGSC0003DMT400008510	Potato	plastid	35.97	42.71
Zm00001d049816_P001	Maize	nucleus	19.16	41.76
PGSC0003DMT400058659	Potato	cytosol, plastid	37.48	37.1
PGSC0003DMT400075869	Potato	nucleus	36.97	36.73
PGSC0003DMT400079660	Potato	cytosol	43.03	34.36
PGSC0003DMT400070431	Potato	nucleus	37.98	32.56
PGSC0003DMT400033224	Potato	nucleus	40.34	31.79

Protein Annotations

Gene3D:1.20.58.1520	MapMan:35.1	ncoils:Coil	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005819	GO:GO:0005856	GO:GO:0005874	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150
GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	UniProt:M1CUA1	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999
EnsemblPlantsGene:PGSC0003DMG400029110	PGSC:PGSC0003DMG400029110	EnsemblPlants:PGSC0003DMT400074853	PANTHER:PTHR19321	PANTHER:PTHR19321:SF3	UniParc:UPI0002967ACA
SEG:seg	:	:	:	:	:

Description

PLE [Source:PGSC_GENE;Acc:PGSC0003DMG400029110]

Coordinates

chr5:+:13614589..13621253

Molecular Weight (calculated)

68112.7 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.638

Length

595 amino acids

Sequence
(BLAST)

001: MGSVQTPIGI RSSALLETSC GYLLQELQMI WDEVGDDQFE REKVLLDIEQ ECLDVYRKKV DNANISRAQL HQELADSEAE FTHLLLLLDE RSLPGRPEKM
101: TGTLKEQLES IAPALREMRI RKEEREKQFR AVQGQIQKIS AEIAGESEYN DLSSNVLVHG NDLSLKKLEE YQNELQRLQN EKIERLQKVE SYISMIRSLA
201: AMLGTDSSLI ITKVHPSLNE LSGLSKNISD SILEKLGSTV RSLEADKKAR LEKLHQLGKS LTNLWNLMDT PQKDRARFSN VTALISLSSK DISTPGSLTL
301: DIIQQAETEV RRLDQLKASK MKELFLRKQV DLEEICKRSH MEIPSRLEME SIMKLMNSGE IDHADLLTSM NKQITQAQEE ASSRKAIMEK VEKWILARDE
401: ELWLEEYSRD DNRYSVSRGA HKNLRRAERA RVMVNKIPAL VDMLIAKTKS WEEERKKPFL YDEVPLFAML EEYNLLRKER DEEKQRQREM KKVQNQVPVG
501: QENLFVLRPS TSSKRLSDRS LNGGFNNATP VNKKSSLGIQ QLGSTPINTP QQSISFLKKS KKEDHRKILS RSRFAFHPGD DSASVVSSFS GPFSP

Best Arabidopsis Sequence Match ( AT1G27920.1 )
(BLAST)

001: MGSLQTPIEM RSSSLLDTSC GYLLRELQMI WDEVGEDKFE REKVLLDIEQ ECVEAYRRKV DHANVSRSRL HQELAESEAE LTHFLLCLGE RSVPGRPEKK
101: GGTLREQLDS IAPALREMRL RKDERVKQFR SVKGEIQKIS AEIAGRSTYE DSTRKITIDD NDLSNKKLEE YQNELHRLHD EKNERLQKVD IYICAIRDLS
201: ATLGTEASMI ITKIHPSLND LYGISKNISD DILKKLNGTV VSLEEEKHKR LEKLHHLGRA LSNLWNLMDA SYEDRQKFFH VIDLLSSAPS DVCAPGSITL
301: DIIQQAEAEV KRLDQLKASR IKELFIKKQK ELEDTCNMSH METPSTEMGN ITNLVDSGEV DHVDLLAAMD EKIARAKEEA ASRKGIIEKV DRWMLASDEE
401: RWLEEYDQDE NRYSVSRNAH RNLRRAERAR ITVSKISGLV ESILVKAKSW EVERQKVFLY NEVPLVAMLQ EYNKLRQEKE MEKQRLREMK KMSIPQPVAE
501: GDNFYMARPA SSNRRISNRS MNGGFGSGSP INRKYSGGFN NTNNNYTALG TSIRRESRKS EA

Arabidopsis Description

MAP65-865-kDa microtubule-associated protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.