Factsheet for VIT_13s0084g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20613	Soybean	cytosol	68.15	67.55
GSMUA_Achr9P17360_001	Banana	cytosol	65.84	63.68
PGSC0003DMT400008510	Potato	plastid	56.05	62.87
Solyc01g096680.2.1	Tomato	nucleus	63.17	62.39
AT2G38720.1	Thale cress	nucleus	58.36	59.64
Bra017106.1-P	Field mustard	nucleus	57.65	59.02
TraesCS1D01G256000.1	Wheat	cytosol	54.27	56.69
TraesCS1B01G267200.2	Wheat	cytosol	57.65	56.25
TraesCS1A01G256800.1	Wheat	nucleus	57.47	56.08
CDY18372	Canola	nucleus	58.19	55.42
CDX93308	Canola	nucleus	57.65	55.01
KXG21994	Sorghum	cytosol	55.69	54.72
Os05t0409400-01	Rice	cytosol, nucleus, plastid	57.3	53.31
Zm00001d038174_P002	Maize	cytosol	55.87	51.22
HORVU1Hr1G063330.5	Barley	golgi	57.12	50.63
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	50.36	50.54
VIT_01s0010g03540.t01	Wine grape	cytosol	45.37	44.97
Zm00001d007926_P001	Maize	cytosol	12.63	44.38
Zm00001d003920_P001	Maize	cytosol	10.68	43.48
Zm00001d004213_P001	Maize	cytosol	11.57	43.05
VIT_01s0011g06330.t01	Wine grape	nucleus	45.73	42.9
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	42.53	39.9
VIT_16s0022g01820.t01	Wine grape	nucleus	45.91	35.34

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:100267765	wikigene:100267765	MapMan:35.1	EMBL:AM450406	ProteinID:CAN74287
ProteinID:CAN74287.1	ProteinID:CBI35061	ProteinID:CBI35061.3	ncoils:Coil	UniProt:D7TX36	EMBL:FN596254
GO:GO:0000226	GO:GO:0000910	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100267765	wikigene:LOC100267765
InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF4	UniParc:UPI00015CCBCE	ArrayExpress:VIT_13s0084g00080
EnsemblPlantsGene:VIT_13s0084g00080	EnsemblPlants:VIT_13s0084g00080.t01	RefSeq:XP_002265814	RefSeq:XP_002265814.2	RefSeq:XP_010659056.1	SEG:seg

Description

No Description!

Coordinates

chr13:+:18624369..18644420

Molecular Weight (calculated)

63941.7 Da

IEP (calculated)

6.959

GRAVY (calculated)

-0.603

Length

562 amino acids

Sequence
(BLAST)

001: MTTIRTPPFS PSQTTCGSLL VELQKIWDEI GESESERDKM LLQLEQECLD IYRRKVEKTK KHRADLCQTL NEAETEVSSL VSALGEHANF VQKEKGTLHE
101: QLSAIKPVLE DLRMKKQERM KEFSETQSQI VRICAEIAGN IQSINSVNAQ VNERDLTMKK LGGLKSYLQE LQSEKILRLQ KVNSHVNTIH ELSVVMSIDF
201: VKTIIEVHPT LVDPSHGQMR SISNDTLARL TGMIHSLKEE KLQRLQKLQD LGSTLMELWN LLDTSVDEQK QFKHVTCLIS SSIDEVVRQG CLALDVIEQT
301: EVEIERLKVL KASKMKELVL KRQNELEEIY RGVHMDLDTD AARQTLVSLI DSGNVDLSDL LSGIDDQIVK AKEQALSRKD ILDKVEKWKY ASDEENWLDD
401: YERDENRYSA GRGAHKNLKR AEKARILVSK IPSIVENLTA KVKAWEMEKG MPFFYDKVPL LQTLEEYIVL RQEREEEKRR SREQKRLQEQ FATEQEALFG
501: SKPTTKKPLG QSTNANTLAG TPVGRRVSTP SSRHGVSAGK ERRDSGRGGT TIPPNYVALP KG

Best Arabidopsis Sequence Match ( AT2G38720.1 )
(BLAST)

001: MSPSSTTTCT SLLEELQMIW DEIGESYNER DKMLLELEQE CLDIYNKKVE KTRKFRAELQ RSLAQAEAEI ASLMSALGEK VSFAKKEGSL KEQISSVKPV
101: LEDLLMKKDR RRKELSETLN QIAEITSNIA GNDYTVSSGS EVDESDLTQR KLDELRADLQ DLRNEKAVRL QKVNSYISAV HELSEILSFD FSKALNSVHS
201: SLTEFSKTHS KSISNDTLAR FTELVKSLKA EKHERLLKLQ GLGRSMQELW NLMETPMDER RRFDHCSSLL SSLPDDALKK GCLSLDIIRE AEDEVRRLNS
301: LKSSKMKELV FKRQCELEEI CRGNHMDINS DAARKSLVEL IESGDGDLSD ILASIDGQIE KAREEALSRK EILDKVDKWR HAKEEETWLD DYEKDENRFS
401: AVRGAHKNLK RAEKARSLIS KIPAMVDVLT TKVKAWEKER GVPFLCDKQP LLQTLEDDIV IRAQREEEKR QFREQKRLQG QLATEKEAKY GSKSAKKKPL
501: GQSLNTDNVT KTPIGRRIGN TPGRSVTSGG KDYRGNAVIP LNYVALQKDD

Arabidopsis Description

MAP65-565-kDa microtubule-associated protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.