Factsheet for PGSC0003DMT400043032

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027956
PGSC0003DMT400043032
PGSC0003DMT400047722
PGSC0003DMT400067932

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22640.1	PGSC0003DMT400027956	AT1G13180.1	17267444
AT2G22640.1	PGSC0003DMT400043032	AT2G22640.1	17267444
AT2G22640.1	PGSC0003DMT400043032	AT2G22640.1	21798944
AT2G22640.1	PGSC0003DMT400043032	AT2G22640.1	25262777
AT2G22640.1	PGSC0003DMT400067932	AT3G23910.1	21798944
AT2G22640.1	PGSC0003DMT400047722	AT3G49290.1	17267444
AT2G22640.1	PGSC0003DMT400047722	AT5G24310.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g043720.2.1	Tomato	cytosol	100.0	89.47
AT2G22640.1	Thale cress	cytosol	87.06	87.06
Bra030221.1-P	Field mustard	cytosol	87.06	86.05
CDX89497	Canola	cytosol	87.06	86.05
CDY25614	Canola	cytosol	87.06	86.05
KRH74448	Soybean	cytosol	84.71	84.71
GSMUA_Achr4P11860_001	Banana	cytosol	83.53	84.52
Bra039922.1-P	Field mustard	cytosol	50.59	84.31
KRH39504	Soybean	cytosol	83.53	83.53
CDY13739	Canola	cytosol	77.65	82.5
EES07816	Sorghum	cytosol	80.0	80.95
Os02t0829900-01	Rice	cytosol	81.18	80.23
GSMUA_Achr9P23800_001	Banana	cytosol	78.82	79.76
TraesCS2A01G196600.1	Wheat	cytosol	81.18	78.41
TraesCS2B01G224200.1	Wheat	cytosol	81.18	78.41
TraesCS2D01G204600.1	Wheat	cytosol	81.18	78.41
VIT_00s0211g00050.t01	Wine grape	cytosol	44.71	70.37
HORVU2Hr1G062760.2	Barley	cytosol	44.71	43.68

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102582169	MapMan:20.2.2.2.3	InterPro:BRICK1	ncoils:Coil	GO:GO:0000902
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987
GO:GO:0010090	GO:GO:0016020	GO:GO:0016043	GO:GO:0030154	GO:GO:0031209	GO:GO:0032403
GO:GO:0042802	GO:GO:0044877	GO:GO:0051259	GO:GO:0071944	UniProt:M1BDY6	PFAM:PD593487
EnsemblPlantsGene:PGSC0003DMG400016688	PGSC:PGSC0003DMG400016688	EnsemblPlants:PGSC0003DMT400043032	PANTHER:PTHR33668	UniParc:UPI0002964DF5	RefSeq:XP_006364014.1
SEG:seg	:	:	:	:	:

Description

Protein BRICK1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016688]

Coordinates

chr3:+:5656903..5657711

Molecular Weight (calculated)

9460.4 Da

IEP (calculated)

5.817

GRAVY (calculated)

0.049

Length

85 amino acids

Sequence
(BLAST)

1: MARAGGITNA VNVGIAVQAD WENREFISHI SLNVRKLFDF LVQFEATTKS KLATLNEKLD TLERRLELLE VQVSTATANP ALFNV

Best Arabidopsis Sequence Match ( AT2G22640.1 )
(BLAST)

1: MAKAGGITNA VNVGIAVQAD WENREFISHI SLNVRRLFEF LVQFESTTKS KLASLNEKLD LLERRLEMLE VQVSTATANP SLFAT

Arabidopsis Description

BRK1Protein BRICK 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94JY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.