Factsheet for Bra038220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001174.1-P
Bra001423.1-P
Bra001773.1-P
Bra005185.1-P
Bra007023.1-P
Bra008660.1-P
Bra009117.1-P
Bra009513.1-P
Bra017340.1-P
Bra018682.1-P
Bra023930.1-P
Bra025176.1-P
Bra026274.1-P
Bra028266.1-P
Bra029783.1-P
Bra030221.1-P
Bra034014.1-P
Bra034807.1-P
Bra035820.1-P
Bra037907.1-P
Bra038220.1-P
Bra038252.1-P
Bra038682.1-P
Bra039922.1-P
Bra040242.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19590.1	Bra005185.1-P	AT1G07660.1	20706207
AT3G19590.1	Bra007023.1-P	AT1G07820.1	20706207
AT3G19590.1	Bra034014.1-P	AT1G67210.1	20706207
AT3G19590.1	Bra029783.1-P	AT2G06990.1	20706207
AT3G19590.1	Bra030221.1-P	AT2G22640.1	25262777
AT3G19590.1	Bra039922.1-P	AT2G22640.1	25262777
AT3G19590.1	Bra001423.1-P	AT3G11830.1	20706207
AT3G19590.1	Bra034807.1-P	AT3G11830.1	20706207
AT3G19590.1	Bra038682.1-P	AT3G11830.1	20706207
AT3G19590.1	Bra038220.1-P	AT3G19590.1	25262777
AT3G19590.1	Bra001773.1-P	AT3G20050.1	20706207
AT3G19590.1	Bra035820.1-P	AT3G20050.1	20706207
AT3G19590.1	Bra038252.1-P	AT3G20050.1	20706207
AT3G19590.1	Bra017340.1-P	AT3G25980.1	25262777
AT3G19590.1	Bra025176.1-P	AT3G25980.1	25262777
AT3G19590.1	Bra018682.1-P	AT3G53730.1	20706207
AT3G19590.1	Bra037907.1-P	AT4G10110.1	20706207
AT3G19590.1	Bra026274.1-P	AT4G28230.1	20706207
AT3G19590.1	Bra009513.1-P	AT5G03740.1	20706207
AT3G19590.1	Bra009117.1-P	AT5G05510.1	25262777
AT3G19590.1	Bra008660.1-P	AT5G15980.1	20706207
AT3G19590.1	Bra001174.1-P	AT5G26360.1	20706207
AT3G19590.1	Bra040242.1-P	AT5G26360.1	20706207
AT3G19590.1	Bra023930.1-P	AT5G51600.1	20706207
AT3G19590.1	Bra028266.1-P	AT5G51600.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42193	Canola	cytosol, plastid	100.0	100.0
CDX95434	Canola	cytosol, plastid	99.71	99.71
AT3G19590.1	Thale cress	cytosol	93.53	93.53
Bra014226.1-P	Field mustard	cytosol, plastid	86.18	86.43
VIT_03s0091g00710.t01	Wine grape	cytosol	83.82	84.57
Solyc01g107160.2.1	Tomato	nucleus	83.82	83.82
PGSC0003DMT400066160	Potato	extracellular	83.53	83.53
EER87819	Sorghum	cytosol	82.94	82.22
Os03t0448600-01	Rice	cytosol	82.94	82.22
TraesCS4A01G058600.1	Wheat	cytosol, plastid	81.76	80.58
TraesCS4D01G245500.2	Wheat	cytosol, plastid	81.47	80.29
TraesCS4B01G246100.1	Wheat	cytosol	67.94	75.24
KRH35672	Soybean	cytosol	27.06	70.23
HORVU4Hr1G067810.1	Barley	plastid	81.47	69.25
TraesCS2A01G194000.1	Wheat	cytosol	63.24	62.14
TraesCS2D01G193800.1	Wheat	cytosol	62.06	61.7
Os07t0588500-00	Rice	cytosol	65.88	61.54
TraesCS2B01G212800.1	Wheat	cytosol	62.35	61.1
Bra003577.1-P	Field mustard	cytosol	30.0	36.96
GSMUA_Achr4P03390_001	Banana	extracellular	43.82	35.22
Bra035162.1-P	Field mustard	plastid	35.88	35.06
Bra008447.1-P	Field mustard	plastid	35.0	34.39
Bra038307.1-P	Field mustard	plastid	33.24	29.89

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra038220	EnsemblPlants:Bra038220.1	EnsemblPlants:Bra038220.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000776	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005828	GO:GO:0005856	GO:GO:0005876	GO:GO:0007049
GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FAV5	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF24	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002544C9A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT3G19590 (E=1e-181) | WD-40 repeat family protein / mitotic checkpoint protein, putative

Coordinates

chrA01:-:21523756..21526157

Molecular Weight (calculated)

37721.3 Da

IEP (calculated)

8.603

GRAVY (calculated)

-0.495

Length

340 amino acids

Sequence
(BLAST)

001: MSQPPPSAGR ELANPPSDGI SNLRFSNTSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDS SGFSVGSDNK VRRIVFNVGK EDVLGMHEKP
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSL SLVGNRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRSYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNAIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPSSIAALS FSRDGQLLAV
301: ASSYTFEEGE KSHEPEAIFV RNVNEIEVKP KPKAYPNPAA

Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)

001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA

Arabidopsis Description

BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.