CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69485
CDX70146
CDX70287
CDX71081
CDX73850
CDX74120
CDX82264
CDX83576
CDX86873
CDX89193
CDX89497
CDX95121
CDX95434
CDX98847
CDX99527
CDY01062
CDY04187
CDY04583
CDY06280
CDY07783
CDY08491
CDY10359
CDY12628
CDY13739
CDY18835
CDY18994
CDY22719
CDY24564
CDY25374
CDY25614
CDY26480
CDY32809
CDY33444
CDY36063
CDY39177
CDY41593
CDY42193
CDY42227
CDY44724
CDY46038
CDY49990
CDY53919
CDY60565
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19590.1	CDY06280	AT1G07660.1	20706207
AT3G19590.1	CDX95121	AT1G07820.1	20706207
AT3G19590.1	CDY12628	AT1G67210.1	20706207
AT3G19590.1	CDY46038	AT1G67210.1	20706207
AT3G19590.1	CDY41593	AT2G06990.1	20706207
AT3G19590.1	CDY44724	AT2G06990.1	20706207
AT3G19590.1	CDX89497	AT2G22640.1	25262777
AT3G19590.1	CDY13739	AT2G22640.1	25262777
AT3G19590.1	CDY25614	AT2G22640.1	25262777
AT3G19590.1	CDY04583	AT2G28740.1	20706207
AT3G19590.1	CDX73850	AT3G11830.1	20706207
AT3G19590.1	CDY01062	AT3G11830.1	20706207
AT3G19590.1	CDY08491	AT3G11830.1	20706207
AT3G19590.1	CDY53919	AT3G11830.1	20706207
AT3G19590.1	CDY67306	AT3G11830.1	20706207
AT3G19590.1	CDX95434	AT3G19590.1	25262777
AT3G19590.1	CDY42193	AT3G19590.1	25262777
AT3G19590.1	CDX82264	AT3G20050.1	20706207
AT3G19590.1	CDY24564	AT3G20050.1	20706207
AT3G19590.1	CDY25374	AT3G20050.1	20706207
AT3G19590.1	CDY33444	AT3G20050.1	20706207
AT3G19590.1	CDY36063	AT3G20050.1	20706207
AT3G19590.1	CDY42227	AT3G20050.1	20706207
AT3G19590.1	CDX83576	AT3G25980.1	25262777
AT3G19590.1	CDY04187	AT3G25980.1	25262777
AT3G19590.1	CDY39177	AT3G25980.1	25262777
AT3G19590.1	CDY07783	AT3G45930.1	20706207
AT3G19590.1	CDY22719	AT3G45930.1	20706207
AT3G19590.1	CDY32809	AT3G46320.1	20706207
AT3G19590.1	CDX71081	AT3G53730.1	20706207
AT3G19590.1	CDX86873	AT4G10110.1	20706207
AT3G19590.1	CDX99527	AT4G10110.1	20706207
AT3G19590.1	CDX89193	AT4G28230.1	20706207
AT3G19590.1	CDY18994	AT4G28230.1	20706207
AT3G19590.1	CDX70287	AT5G03740.1	20706207
AT3G19590.1	CDY10359	AT5G03740.1	20706207
AT3G19590.1	CDX70146	AT5G05510.1	25262777
AT3G19590.1	CDX98847	AT5G05510.1	25262777
AT3G19590.1	CDX69485	AT5G15980.1	20706207
AT3G19590.1	CDY26480	AT5G15980.1	20706207
AT3G19590.1	CDX74120	AT5G26360.1	20706207
AT3G19590.1	CDY18835	AT5G26360.1	20706207
AT3G19590.1	CDY49990	AT5G26360.1	20706207
AT3G19590.1	CDY60565	AT5G59690.1	20706207
AT3G19590.1	CDY32809	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038220.1-P	Field mustard	cytosol, plastid	99.71	99.71
CDY42193	Canola	cytosol, plastid	99.71	99.71
AT3G19590.1	Thale cress	cytosol	93.53	93.53
CDY59371	Canola	cytosol, plastid	86.18	86.43
CDY03579	Canola	cytosol, plastid	86.18	86.18
VIT_03s0091g00710.t01	Wine grape	cytosol	83.82	84.57
Solyc01g107160.2.1	Tomato	nucleus	83.82	83.82
PGSC0003DMT400066160	Potato	extracellular	83.53	83.53
EER87819	Sorghum	cytosol	82.94	82.22
Os03t0448600-01	Rice	cytosol	82.94	82.22
TraesCS4A01G058600.1	Wheat	cytosol, plastid	81.76	80.58
TraesCS4D01G245500.2	Wheat	cytosol, plastid	81.47	80.29
TraesCS4B01G246100.1	Wheat	cytosol	67.94	75.24
KRH35672	Soybean	cytosol	27.06	70.23
HORVU4Hr1G067810.1	Barley	plastid	81.47	69.25
TraesCS2A01G194000.1	Wheat	cytosol	63.24	62.14
TraesCS2D01G193800.1	Wheat	cytosol	62.06	61.7
Os07t0588500-00	Rice	cytosol	65.88	61.54
TraesCS2B01G212800.1	Wheat	cytosol	62.35	61.1
CDY44065	Canola	cytosol	34.41	37.14
CDY28548	Canola	cytosol	34.12	36.83
CDX79657	Canola	cytosol	5.29	36.73
CDX67958	Canola	cytosol, plastid	35.88	35.26
GSMUA_Achr4P03390_001	Banana	extracellular	43.82	35.22
CDX79362	Canola	cytosol, plastid	34.71	35.12
CDY39955	Canola	plastid	35.88	35.06
CDX87331	Canola	plastid	35.88	35.06
CDY66129	Canola	plastid	35.0	34.39
CDY53220	Canola	plastid	35.0	34.39
CDY72330	Canola	cytosol	9.41	32.0

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EnsemblPlants:CDX95434	ProteinID:CDX95434	ProteinID:CDX95434.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00101180001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF24	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EC61CE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC01g33260D

Coordinates

chrLK031889:-:64171..66973

Molecular Weight (calculated)

37706.3 Da

IEP (calculated)

8.603

GRAVY (calculated)

-0.474

Length

340 amino acids

Sequence
(BLAST)

001: MSLPPPSAGR ELANPPSDGI SNLRFSNTSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDS SGFSVGSDNK VRRIVFNVGK EDVLGMHEKP
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSL SLVGNRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRSYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNAIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPSSIAALS FSRDGQLLAV
301: ASSYTFEEGE KSHEPEAIFV RNVNEIEVKP KPKAYPNPAA

Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)

001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA

Arabidopsis Description

BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.