CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	CDY68484	AT4G05420.1	18223036
AT1G80670.1	CDY69266	AT4G05420.1	18223036
AT1G80670.1	CDY69930	AT4G05420.1	18223036
AT1G80670.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67958	Canola	cytosol, plastid	96.43	93.64
Bra003577.1-P	Field mustard	cytosol	74.4	90.58
CDY66129	Canola	plastid	91.37	88.73
CDY53220	Canola	plastid	91.37	88.73
CDX87331	Canola	plastid	90.18	87.07
CDY39955	Canola	plastid	89.88	86.78
AT1G80670.1	Thale cress	cytosol, plastid	88.1	84.81
KRH71020	Soybean	cytosol, plastid	78.57	76.08
KRH75181	Soybean	nucleus	78.27	75.79
Os08t0176800-01	Rice	plastid	76.19	74.85
TraesCS1D01G034200.1	Wheat	plastid	75.3	73.76
TraesCS1B01G041300.1	Wheat	plastid	75.0	73.47
TraesCS1A01G033000.1	Wheat	plastid	75.0	73.47
CDX79657	Canola	cytosol	10.71	73.47
Solyc10g047000.1.1	Tomato	nucleus	74.4	71.43
Os01t0635400-01	Rice	cytosol, plastid	71.73	70.06
EES01141	Sorghum	plastid	71.43	69.77
TraesCS3B01G258300.1	Wheat	plastid	70.24	68.41
Zm00001d044116_P001	Maize	cytosol, plastid	70.24	68.41
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	75.3	68.38
TraesCS3A01G226200.1	Wheat	plastid	69.94	68.12
KXG24577	Sorghum	cytosol, plastid	72.62	67.97
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	74.7	67.84
TraesCS3D01G224200.1	Wheat	plastid	69.64	67.83
CDY72330	Canola	cytosol	18.45	62.0
HORVU1Hr1G004960.1	Barley	plastid	75.0	61.61
HORVU3Hr1G056400.2	Barley	cytosol, plastid	69.05	58.15
CDY42193	Canola	cytosol, plastid	35.12	34.71
CDX95434	Canola	cytosol, plastid	35.12	34.71
CDY03579	Canola	cytosol, plastid	33.63	33.24
CDY59371	Canola	cytosol, plastid	33.33	33.04
CDY44065	Canola	cytosol	21.73	23.17
CDY28548	Canola	cytosol	21.43	22.86

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EnsemblPlants:CDX79362	ProteinID:CDX79362	ProteinID:CDX79362.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00132056001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEE1CC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC06g19410D

Coordinates

chrLK031817:+:1619493..1622295

Molecular Weight (calculated)

37109.5 Da

IEP (calculated)

7.952

GRAVY (calculated)

-0.426

Length

336 amino acids

Sequence
(BLAST)

001: MVTFGATANS NPNKSFEVTP SPSDSISSLS FSPRADVLVA TSWDNQVRCW EISRSGTSLS SAPKASISHD QPVLCSAWKD DGTTVFSGGC DKQAKMWPLL
101: SGGQPVTVAV HDAPIVDMAW IPGMNLLVTG SWDKTLKYWD TRQQTPVHTQ QLPDKCYSLS VKHPLHDLLP CFSYTEFKRI VSPLKYQTRC VAAFPDQQGF
201: LVGSIEGRVG VHHLDGSQQD KNFTFKCHRD GNDIYSVNAL NFHPVHGTFA TAGSDGAFHF WDKDNKQRLK VMSRCSQPIT CSSFNHDGSI YAYASCYDWS
301: KGAENHNPAT AKSSIFLHLP EESEVKAKPK VTTSRK

Best Arabidopsis Sequence Match ( AT1G15850.1 )
(BLAST)

001: MSTSGDKATS STNNPNNSYE ITPPATDSIS SLSFSPKADI LVATSWDCQV RCWEITRSDG SIASEPKVSM SHDQPVLCSA WKDDGTTVFT GGCDKQAKMW
101: PLLSGAQPST VAMHDAPFNQ IAWIPGMNLL VTGSWDKTLK

Arabidopsis Description

F7H2.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.