Factsheet for Zm00001d044116_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT1G80670.1	Zm00001d039165_P046	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01141	Sorghum	plastid	90.72	90.99
Os01t0635400-01	Rice	cytosol, plastid	86.38	86.63
TraesCS3B01G258300.1	Wheat	plastid	85.51	85.51
TraesCS3A01G226200.1	Wheat	plastid	84.93	84.93
TraesCS3D01G224200.1	Wheat	plastid	84.93	84.93
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	75.07	75.07
Solyc10g047000.1.1	Tomato	nucleus	75.94	74.86
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	75.65	74.57
CDY66129	Canola	plastid	73.91	73.7
CDY53220	Canola	plastid	73.91	73.7
Bra008447.1-P	Field mustard	plastid	73.91	73.7
Bra003577.1-P	Field mustard	cytosol	58.84	73.55
CDX67958	Canola	cytosol, plastid	73.62	73.41
AT1G80670.1	Thale cress	cytosol, plastid	74.2	73.35
KRH71020	Soybean	cytosol, plastid	72.75	72.33
KRH75181	Soybean	nucleus	72.75	72.33
HORVU3Hr1G056400.2	Barley	cytosol, plastid	83.48	72.18
CDY39955	Canola	plastid	72.75	72.13
CDX87331	Canola	plastid	72.75	72.13
Bra035162.1-P	Field mustard	plastid	72.75	72.13
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	76.23	71.08
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	75.94	70.81
CDX79362	Canola	cytosol, plastid	68.41	70.24
AT1G15850.1	Thale cress	plastid	25.51	62.86
Zm00001d034081_P002	Maize	cytosol, mitochondrion	19.13	21.93

Protein Annotations

EntrezGene:100286267	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	UniProt:B6UGZ9	EMBL:EU976514	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
ProteinID:ONM39950.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000182FD3C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d044116	EnsemblPlants:Zm00001d044116_P001	EnsemblPlants:Zm00001d044116_T001	:

Description

Rae1-like protein

Coordinates

chr3:-:219691690..219699173

Molecular Weight (calculated)

37947.7 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.388

Length

345 amino acids

Sequence
(BLAST)

001: MASFNPAGAS AANHNPNKSF EVTPAPGDSV SSLSFSPKAN HLVATSWDNQ VRCWEVMAGG ACQAKASISH DQPVLCSAWK DDGLTVFSGG CDKQVKMWPL
101: LSGAQPTVFS GHEAPIKELA WVPQMNLLVS GSWDKTLRYW DIRQPQPVHV QQLPERCYAL SLCYPLMVVG TADRNVIVFN LQNPQAEFKR ITSPLKLQTR
201: CLAAFPDQQG FLIGSIEGRV GVHHVEESQQ GKNFTFKCHR DGNDIYAISS LNFHPVHGTF ATTGSDGSFN FWDKDSKQRL KAYNRCPSPI TCSAFNHDGS
301: IFAYAVCYDW SKGAEKHNPS TAKTNIFLHS AQDSDVKGKP RAGKK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.