CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	CDY68484	AT4G05420.1	18223036
AT1G80670.1	CDY69266	AT4G05420.1	18223036
AT1G80670.1	CDY69930	AT4G05420.1	18223036
AT1G80670.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008447.1-P	Field mustard	plastid	100.0	100.0
CDY53220	Canola	plastid	100.0	100.0
CDX87331	Canola	plastid	96.24	95.69
CDY39955	Canola	plastid	95.95	95.4
CDX67958	Canola	cytosol, plastid	93.93	93.93
AT1G80670.1	Thale cress	cytosol, plastid	93.35	92.55
CDX79362	Canola	cytosol, plastid	88.73	91.37
KRH71020	Soybean	cytosol, plastid	82.95	82.71
KRH75181	Soybean	nucleus	82.37	82.13
Os08t0176800-01	Rice	plastid	80.06	80.99
TraesCS1D01G034200.1	Wheat	plastid	79.19	79.88
TraesCS1B01G041300.1	Wheat	plastid	78.9	79.59
TraesCS1A01G033000.1	Wheat	plastid	78.9	79.59
Solyc10g047000.1.1	Tomato	nucleus	78.32	77.43
Os01t0635400-01	Rice	cytosol, plastid	75.43	75.87
EES01141	Sorghum	plastid	75.14	75.58
CDX79657	Canola	cytosol	10.69	75.51
Zm00001d044116_P001	Maize	cytosol, plastid	73.7	73.91
KXG24577	Sorghum	cytosol, plastid	76.3	73.54
TraesCS3B01G258300.1	Wheat	plastid	73.12	73.33
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	78.32	73.24
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	78.32	73.24
TraesCS3A01G226200.1	Wheat	plastid	72.83	73.04
TraesCS3D01G224200.1	Wheat	plastid	72.54	72.75
HORVU1Hr1G004960.1	Barley	plastid	78.61	66.5
CDY72330	Canola	cytosol	19.08	66.0
HORVU3Hr1G056400.2	Barley	cytosol, plastid	71.68	62.16
CDY42193	Canola	cytosol, plastid	34.39	35.0
CDX95434	Canola	cytosol, plastid	34.39	35.0
CDY03579	Canola	cytosol, plastid	32.95	33.53
CDY59371	Canola	cytosol, plastid	32.66	33.33
CDY44065	Canola	cytosol	21.68	23.81
CDY28548	Canola	cytosol	21.39	23.49

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	UniProt:A0A078JHH1	ProteinID:CDY53220.1	EnsemblPlants:CDY66129	ProteinID:CDY66129
ProteinID:CDY66129.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00052135001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002546A70
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaC02g46520DBnaA02g19480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHH1]

Coordinates

chrLK035098:-:4860..7749

Molecular Weight (calculated)

38133.8 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.417

Length

346 amino acids

Sequence
(BLAST)

001: MATFGATANT NPNKSFEVTP SPADSISSLS FSPRADILVA TSWDNQVRCW EISRSGASLA SAPKASISHD QPVLCSAWKD DGTTVFSGGC DKQAKMWPLL
101: SGGQPVTVAM HDAPIVDMAW IPGMNLLVTG SWDKTLRYWD TRQQTPVHTQ QLPDKCYALS VKHPLMVVGT ADRNLIVFNL QNPQTEFKRI VSPLKYQTRC
201: VTAFPDQQGF LVGSIEGRVG VHHLDDSQQN KNFTFKCHRD GNEIYSVNAL NFHPVQGTFA TAGSDGAFNF WDKDSKQRLK AMSRCSQPIP CSSFNHDGSI
301: YAYASCYDWS KGAENHNPAT AKSSIFLHLP QESEVKAKPR VTTGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.