CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	KXG22678	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0176800-01	Rice	plastid	87.74	92.11
TraesCS1D01G034200.1	Wheat	plastid	85.24	89.21
TraesCS1B01G041300.1	Wheat	plastid	85.24	89.21
TraesCS1A01G033000.1	Wheat	plastid	84.96	88.92
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	77.72	79.71
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	75.77	78.84
KRH75181	Soybean	nucleus	75.49	78.1
KRH71020	Soybean	cytosol, plastid	75.49	78.1
EES01141	Sorghum	plastid	74.09	77.33
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	79.11	76.76
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	78.83	76.49
CDY66129	Canola	plastid	73.54	76.3
CDY53220	Canola	plastid	73.54	76.3
Bra008447.1-P	Field mustard	plastid	73.54	76.3
Bra003577.1-P	Field mustard	cytosol	58.5	76.09
AT1G80670.1	Thale cress	cytosol, plastid	73.82	75.93
Solyc10g047000.1.1	Tomato	nucleus	73.82	75.71
CDX67958	Canola	cytosol, plastid	72.14	74.86
CDY39955	Canola	plastid	71.87	74.14
CDX87331	Canola	plastid	71.87	74.14
Bra035162.1-P	Field mustard	plastid	71.87	74.14
HORVU1Hr1G004960.1	Barley	plastid	84.4	74.08
CDX79362	Canola	cytosol, plastid	67.97	72.62
AT1G15850.1	Thale cress	plastid	26.46	67.86
EER87819	Sorghum	cytosol	31.2	32.65
OQU90950	Sorghum	mitochondrion	20.06	22.29

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	UniProt:A0A1B6PG21	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG24577	ProteinID:KXG24577
ProteinID:KXG24577.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF16	SMART:SM00320	EnsemblPlantsGene:SORBI_3007G061000	SUPFAM:SSF50978	UniParc:UPI0001C80C6B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:6400636..6410340

Molecular Weight (calculated)

39757.7 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.358

Length

359 amino acids

Sequence
(BLAST)

001: MASLTGLAAN PNPNKSFEIL PNPGDSVSSL SFSPKSNLLV ATSWDNQVRC WEIVGGNSQP KASISHDQPV LCSAWKDDGT TVFSGGCDKQ VKMWPLLSGG
101: QPQTVAMHDA PVKEVAWIPQ MNLLVSGSWD KTLRYWDTRQ ANPVHIQQLP ERCYALTVNY PLMIVGTADR HLVVFNLQNP QTEFKRIQSP LKYQTRCLAA
201: FPDQQGFLVG SIEGRVGVHH IDDAQQSKNF TFKCHREGND IFSVNSLNFH PVHHTFATAG SDGAFNFWDK DSKQRLKAFS RCPLPIPCST FNSDGSIFAY
301: AVCYDWSRGA ENHNPAAAKT SIYLHSPQIN PVLDYDGHGA IYGYPPSQSV QSKVAFQVE

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.