Factsheet for Bra003577.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029577.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	Bra029577.1-P	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67958	Canola	cytosol, plastid	98.19	78.32
CDX79362	Canola	cytosol, plastid	90.58	74.4
Bra008447.1-P	Field mustard	plastid	92.39	73.7
Bra035162.1-P	Field mustard	plastid	92.39	73.28
AT1G80670.1	Thale cress	cytosol, plastid	89.86	71.06
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	82.97	66.38
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	83.7	66.0
KRH71020	Soybean	cytosol, plastid	81.52	64.84
Os08t0176800-01	Rice	plastid	80.07	64.62
KRH75181	Soybean	nucleus	80.8	64.27
TraesCS1D01G034200.1	Wheat	plastid	78.62	63.27
TraesCS1B01G041300.1	Wheat	plastid	78.62	63.27
TraesCS1A01G033000.1	Wheat	plastid	78.26	62.97
Solyc10g047000.1.1	Tomato	nucleus	77.9	61.43
Os01t0635400-01	Rice	cytosol, plastid	75.36	60.47
EES01141	Sorghum	plastid	75.0	60.17
Zm00001d044116_P001	Maize	cytosol, plastid	73.55	58.84
TraesCS3B01G258300.1	Wheat	plastid	73.19	58.55
KXG24577	Sorghum	cytosol, plastid	76.09	58.5
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	78.26	58.38
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	78.26	58.38
TraesCS3A01G226200.1	Wheat	plastid	72.83	58.26
TraesCS3D01G224200.1	Wheat	plastid	72.46	57.97
HORVU1Hr1G004960.1	Barley	plastid	77.9	52.57
HORVU3Hr1G056400.2	Barley	cytosol, plastid	72.83	50.38
Bra038220.1-P	Field mustard	cytosol, plastid	36.96	30.0
Bra014226.1-P	Field mustard	cytosol, plastid	36.23	29.5
Bra038307.1-P	Field mustard	plastid	20.29	14.81

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EnsemblPlantsGene:Bra003577	EnsemblPlants:Bra003577.1	EnsemblPlants:Bra003577.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4CH94	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002541308	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

AT1G80670 (E=5e-152) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:-:13888515..13890398

Molecular Weight (calculated)

30663.3 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.411

Length

276 amino acids

Sequence
(BLAST)

001: MKVLCSAWKD DGTTVFSGGC DKQAKMWPLL SGGQPVTVAV HDAPIVDMAC IPGMNLLVTG SWDKTLKYWD TRQQTPVHTQ QLPDKCYSLS VKHPLLVVGT
101: ADRNLIVFNL QNPQTEFKRV VSPLKYQTRC VAAFPDQQGF LVGSIEGRVG VHHLDGSQQD KNFTFKCHRD GNDIYSVNAL NFHPVHGTFA TAGSDGAFHF
201: WDKDSKQRLK VMSRCNQPIT CSSFNHDGSI YAYASCYDWS KGAENHNPAT AKSSIFLHLP EESEVKAKPR VTTSKK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.