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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 1
  • plastid 5
  • cytosol 3
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003577.1-P Field mustard cytosol 78.32 98.19
CDX79362 Canola cytosol, plastid 93.64 96.43
CDY66129 Canola plastid 93.93 93.93
CDY53220 Canola plastid 93.93 93.93
CDX87331 Canola plastid 93.06 92.53
CDY39955 Canola plastid 92.77 92.24
AT1G80670.1 Thale cress cytosol, plastid 90.75 89.97
KRH71020 Soybean cytosol, plastid 81.79 81.56
KRH75181 Soybean nucleus 81.21 80.98
Os08t0176800-01 Rice plastid 78.61 79.53
TraesCS1D01G034200.1 Wheat plastid 77.17 77.84
TraesCS1B01G041300.1 Wheat plastid 76.88 77.55
TraesCS1A01G033000.1 Wheat plastid 76.88 77.55
Solyc10g047000.1.1 Tomato nucleus 77.17 76.29
Os01t0635400-01 Rice cytosol, plastid 74.86 75.29
EES01141 Sorghum plastid 74.28 74.71
Zm00001d044116_P001 Maize cytosol, plastid 73.41 73.62
CDX79657 Canola cytosol 10.4 73.47
TraesCS3B01G258300.1 Wheat plastid 72.54 72.75
GSMUA_Achr6P30400_001 Banana cytosol, plastid 77.75 72.7
TraesCS3A01G226200.1 Wheat plastid 72.25 72.46
TraesCS3D01G224200.1 Wheat plastid 71.97 72.17
GSMUA_Achr6P30360_001 Banana cytosol, plastid 77.17 72.16
KXG24577 Sorghum cytosol, plastid 74.86 72.14
HORVU1Hr1G004960.1 Barley plastid 77.17 65.28
CDY72330 Canola cytosol 17.92 62.0
HORVU3Hr1G056400.2 Barley cytosol, plastid 71.39 61.9
CDY42193 Canola cytosol, plastid 35.26 35.88
CDX95434 Canola cytosol, plastid 35.26 35.88
CDY03579 Canola cytosol, plastid 33.81 34.41
CDY59371 Canola cytosol, plastid 33.53 34.22
CDY44065 Canola cytosol 21.68 23.81
CDY28548 Canola cytosol 21.39 23.49
Protein Annotations
Gene3D:2.130.10.10MapMan:23.5.1.1.1.10EnsemblPlants:CDX67958ProteinID:CDX67958ProteinID:CDX67958.1InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00099170001InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986PFAM:PF00400PRINTS:PR00320PFscan:PS50082PFscan:PS50294PANTHER:PTHR10971
PANTHER:PTHR10971:SF16SMART:SM00320SUPFAM:SSF50978UniParc:UPI0004EEBBAAInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
BnaA07g19980D
Coordinates
chrLK031787:-:3105890..3108681
Molecular Weight (calculated)
38113.7 Da
IEP (calculated)
8.170
GRAVY (calculated)
-0.399
Length
346 amino acids
Sequence
(BLAST)
001: MVTFGATANT NPNKSFEVTP SPSDSISSLS FSPRADVLVA TSWDNQVRCW EISRSGTSLS SAPKASISHD QPVLCSAWKD DGTTVFSGGC DKQAKMWPLL
101: SGGQPVTVAV HDAPIVDMAW IPGMNLLVTG SWDKTLKYWD TRQQTPVHTQ QLPDKCYSLS VKHPLLVVGT ADRNLIVFNL QNPQTEFKRI VSPLKYQTRC
201: VAAFPDQQGF LVGSIEGRVG VHHLDGSQQD KNFTFKCHRD GNDIYSVNAL NFHPVHGTFA TAGSDGAFHF WDKDSKQRLK VMSRCSQPIT CSSFNHDGSI
301: YAYASCYDWS KGAENHNPAT AKSSIFLHLP EESEVKAKPR VTTSKK
Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)
001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK
Arabidopsis Description
RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.