Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- cytosol 3
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G80670.1 | CDY68484 | AT4G05420.1 | 18223036 |
AT1G80670.1 | CDY69266 | AT4G05420.1 | 18223036 |
AT1G80670.1 | CDY69930 | AT4G05420.1 | 18223036 |
AT1G80670.1 | CDY70585 | AT4G05420.1 | 18223036 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra003577.1-P | Field mustard | cytosol | 78.32 | 98.19 |
CDX79362 | Canola | cytosol, plastid | 93.64 | 96.43 |
CDY66129 | Canola | plastid | 93.93 | 93.93 |
CDY53220 | Canola | plastid | 93.93 | 93.93 |
CDX87331 | Canola | plastid | 93.06 | 92.53 |
CDY39955 | Canola | plastid | 92.77 | 92.24 |
AT1G80670.1 | Thale cress | cytosol, plastid | 90.75 | 89.97 |
KRH71020 | Soybean | cytosol, plastid | 81.79 | 81.56 |
KRH75181 | Soybean | nucleus | 81.21 | 80.98 |
Os08t0176800-01 | Rice | plastid | 78.61 | 79.53 |
TraesCS1D01G034200.1 | Wheat | plastid | 77.17 | 77.84 |
TraesCS1B01G041300.1 | Wheat | plastid | 76.88 | 77.55 |
TraesCS1A01G033000.1 | Wheat | plastid | 76.88 | 77.55 |
Solyc10g047000.1.1 | Tomato | nucleus | 77.17 | 76.29 |
Os01t0635400-01 | Rice | cytosol, plastid | 74.86 | 75.29 |
EES01141 | Sorghum | plastid | 74.28 | 74.71 |
Zm00001d044116_P001 | Maize | cytosol, plastid | 73.41 | 73.62 |
CDX79657 | Canola | cytosol | 10.4 | 73.47 |
TraesCS3B01G258300.1 | Wheat | plastid | 72.54 | 72.75 |
GSMUA_Achr6P30400_001 | Banana | cytosol, plastid | 77.75 | 72.7 |
TraesCS3A01G226200.1 | Wheat | plastid | 72.25 | 72.46 |
TraesCS3D01G224200.1 | Wheat | plastid | 71.97 | 72.17 |
GSMUA_Achr6P30360_001 | Banana | cytosol, plastid | 77.17 | 72.16 |
KXG24577 | Sorghum | cytosol, plastid | 74.86 | 72.14 |
HORVU1Hr1G004960.1 | Barley | plastid | 77.17 | 65.28 |
CDY72330 | Canola | cytosol | 17.92 | 62.0 |
HORVU3Hr1G056400.2 | Barley | cytosol, plastid | 71.39 | 61.9 |
CDY42193 | Canola | cytosol, plastid | 35.26 | 35.88 |
CDX95434 | Canola | cytosol, plastid | 35.26 | 35.88 |
CDY03579 | Canola | cytosol, plastid | 33.81 | 34.41 |
CDY59371 | Canola | cytosol, plastid | 33.53 | 34.22 |
CDY44065 | Canola | cytosol | 21.68 | 23.81 |
CDY28548 | Canola | cytosol | 21.39 | 23.49 |
Protein Annotations
Gene3D:2.130.10.10 | MapMan:23.5.1.1.1.10 | EnsemblPlants:CDX67958 | ProteinID:CDX67958 | ProteinID:CDX67958.1 | InterPro:G-protein_beta_WD-40_rep |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00099170001 | InterPro:IPR001680 | InterPro:IPR015943 |
InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10971 |
PANTHER:PTHR10971:SF16 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EEBBAA | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaA07g19980D
Coordinates
chrLK031787:-:3105890..3108681
Molecular Weight (calculated)
38113.7 Da
IEP (calculated)
8.170
GRAVY (calculated)
-0.399
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTFGATANT NPNKSFEVTP SPSDSISSLS FSPRADVLVA TSWDNQVRCW EISRSGTSLS SAPKASISHD QPVLCSAWKD DGTTVFSGGC DKQAKMWPLL
101: SGGQPVTVAV HDAPIVDMAW IPGMNLLVTG SWDKTLKYWD TRQQTPVHTQ QLPDKCYSLS VKHPLLVVGT ADRNLIVFNL QNPQTEFKRI VSPLKYQTRC
201: VAAFPDQQGF LVGSIEGRVG VHHLDGSQQD KNFTFKCHRD GNDIYSVNAL NFHPVHGTFA TAGSDGAFHF WDKDSKQRLK VMSRCSQPIT CSSFNHDGSI
301: YAYASCYDWS KGAENHNPAT AKSSIFLHLP EESEVKAKPR VTTSKK
101: SGGQPVTVAV HDAPIVDMAW IPGMNLLVTG SWDKTLKYWD TRQQTPVHTQ QLPDKCYSLS VKHPLLVVGT ADRNLIVFNL QNPQTEFKRI VSPLKYQTRC
201: VAAFPDQQGF LVGSIEGRVG VHHLDGSQQD KNFTFKCHRD GNDIYSVNAL NFHPVHGTFA TAGSDGAFHF WDKDSKQRLK VMSRCSQPIT CSSFNHDGSI
301: YAYASCYDWS KGAENHNPAT AKSSIFLHLP EESEVKAKPR VTTSKK
001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK
Arabidopsis Description
RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.