Factsheet for HORVU0Hr1G027960.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT1G65030.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT1G65030.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT1G65030.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G008820.2	Barley	mitochondrion	72.29	68.97
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	60.54	62.62
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	59.64	61.49
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	59.34	60.99
Os12t0615900-01	Rice	nucleus	40.66	54.0
EES16386	Sorghum	plastid	53.01	53.33
Zm00001d022257_P002	Maize	plastid	50.9	49.13
GSMUA_Achr4P31530_001	Banana	cytosol	39.16	37.04
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	37.65	36.98
KRH37745	Soybean	nucleus	35.24	36.68
CDY01885	Canola	plastid	17.47	36.48
PGSC0003DMT400057752	Potato	cytosol	34.64	34.12
Solyc02g078830.2.1	Tomato	nucleus	34.64	34.12
KRH12797	Soybean	nucleus	34.94	33.43
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	33.73	32.46
CDY64887	Canola	cytosol	33.13	32.16
CDX96086	Canola	cytosol	33.13	31.98
Bra004232.1-P	Field mustard	cytosol	33.13	31.98
CDY12650	Canola	cytosol	32.83	31.69
CDY01817	Canola	cytosol	32.83	31.69
Bra033995.1-P	Field mustard	cytosol	27.41	23.58

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A287E9N2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU0Hr1G027960	EnsemblPlants:HORVU0Hr1G027960.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000B481F5E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:148493160..148494756

Molecular Weight (calculated)

30012.8 Da

IEP (calculated)

10.489

GRAVY (calculated)

-0.294

Length

332 amino acids

Sequence
(BLAST)

001: GPQSTAKRPN PQTLLPFPPP TLPAAXVHKA RRNDQTPKPF SPFLPQPFRR RRRRVGSLAP SPMALVAGSY ERFIWGFSLK AVSAGASDED PRPLAPLFSY
101: PAHAGPIRCV AAAPRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXNL LRGRRCFTCR LERPASAVAY AEDAAGGDRF
201: VMAAEEKVTV HDSEDARIIH DMRCDKRVLA LAPSKNGVLY TGGEDRGITA WDLSSGKVSS RIEGAHSTRV KGIVVFDDRN DGSESSTLVA SASSDGIIRI
301: WDVRMIGSEK PTPLAEASTK ARLTCLAGTS LK

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.