Factsheet for Zm00001d022257_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT1G65030.1	Zm00001d039165_P046	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16386	Sorghum	plastid	84.3	87.88
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	74.42	79.75
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	74.42	79.5
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	74.42	79.26
Os12t0615900-01	Rice	nucleus	56.1	77.2
HORVU5Hr1G008820.2	Barley	mitochondrion	74.13	73.28
GSMUA_Achr4P31530_001	Banana	cytosol	55.23	54.13
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	51.45	52.37
HORVU0Hr1G027960.1	Barley	plastid	49.13	50.9
KRH37745	Soybean	nucleus	45.93	49.53
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	48.84	48.7
Solyc02g078830.2.1	Tomato	nucleus	47.09	48.07
CDY64887	Canola	cytosol	47.67	47.95
CDY12650	Canola	cytosol	47.67	47.67
CDX96086	Canola	cytosol	47.67	47.67
Bra004232.1-P	Field mustard	cytosol	47.67	47.67
PGSC0003DMT400057752	Potato	cytosol	46.51	47.48
CDY01817	Canola	cytosol	47.38	47.38
KRH12797	Soybean	nucleus	46.8	46.4
CDY01885	Canola	plastid	16.57	35.85
Bra033995.1-P	Field mustard	cytosol	38.08	33.94

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A1D6IKN3	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM59962.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000844C1F1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d022257	EnsemblPlants:Zm00001d022257_P002	EnsemblPlants:Zm00001d022257_T002	SEG:seg	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr7:+:173797180..173799742

Molecular Weight (calculated)

35987.0 Da

IEP (calculated)

8.401

GRAVY (calculated)

0.083

Length

344 amino acids

Sequence
(BLAST)

001: MALVAGSYER FIWGFSLKTL TSPSATGASP SETLTLAPLF SYPAHTGPVR CVAAAPRAGL VASGGADDSV RLYDLPSAAD LGPLLDPSAA VSALAFYSRG
101: PVPRNLLAAC DDGSLHIYDA DGFALLSTLR AFPRHEAAEA LAVHPSGRVA LAVGRAGALA MLNLVRGRRS FACRLEHPAS AIAYAEDRDG GDRFVMAAEN
201: KVSVHDSVDA RVIHDMDCGK KVLAMAPAKS GVLYTGGEDR CITAWDLSSG KVSSRIEGAH ATRVKGVVVF GNSNDGSQLS NLISSASSDG VIRIWDIRTI
301: GNGKPTPLAE ANTKARLTCL AGTSLKCAVD SRNLQFARRL ILHC

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.