CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	CDY68484	AT4G05420.1	18223036
AT1G65030.1	CDY69266	AT4G05420.1	18223036
AT1G65030.1	CDY69930	AT4G05420.1	18223036
AT1G65030.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96086	Canola	cytosol	98.84	98.84
CDY64887	Canola	cytosol	96.22	96.78
CDY12650	Canola	cytosol	95.93	95.93
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	90.12	89.86
CDY01885	Canola	plastid	36.92	79.87
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	64.24	65.38
KRH37745	Soybean	nucleus	57.56	62.07
Solyc02g078830.2.1	Tomato	nucleus	60.47	61.72
PGSC0003DMT400057752	Potato	cytosol	60.47	61.72
KRH12797	Soybean	nucleus	57.85	57.35
GSMUA_Achr4P31530_001	Banana	cytosol	54.07	52.99
Os12t0615900-01	Rice	nucleus	36.05	49.6
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	46.22	49.53
EES16386	Sorghum	plastid	47.38	49.39
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	46.22	49.38
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	46.22	49.23
Zm00001d022257_P002	Maize	plastid	47.38	47.38
HORVU5Hr1G008820.2	Barley	mitochondrion	45.06	44.54
HORVU0Hr1G027960.1	Barley	plastid	31.69	32.83

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlants:CDY01817	ProteinID:CDY01817	ProteinID:CDY01817.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00112971001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EE0CB6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC06g28570D

Coordinates

chrLK031929:-:518234..519646

Molecular Weight (calculated)

37044.9 Da

IEP (calculated)

7.885

GRAVY (calculated)

-0.195

Length

344 amino acids

Sequence
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDADTQTLT LSPLFSYPSH ISSITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHTASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLSIHP SGKLALAVYR DECFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFFMVV NSKVGVHQSE
201: DAKLLLELDN GSRKRILCAS PGDSGTLFTA GEDRAITAWD TNSGKLAYSI QDAHPARIKG VVTLTKNDSD GASEDPYLVA SASSDGIIRV WDMRMAAKEN
301: AKPLAETNTK SRLTCLAGSA LNSMRRPQIG NQKAQKLEEG LNTE

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.