Factsheet for Solyc02g078830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	Solyc02g021650.2.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057752	Potato	cytosol	98.22	98.22
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	68.84	68.64
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	62.02	60.58
CDY01817	Canola	cytosol	61.72	60.47
CDY64887	Canola	cytosol	61.13	60.23
KRH37745	Soybean	nucleus	56.97	60.19
Bra004232.1-P	Field mustard	cytosol	61.42	60.17
CDX96086	Canola	cytosol	61.42	60.17
CDY12650	Canola	cytosol	60.83	59.59
KRH12797	Soybean	nucleus	57.27	55.62
GSMUA_Achr4P31530_001	Banana	cytosol	56.38	54.13
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	50.45	52.96
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	49.55	51.86
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	49.26	51.39
EES16386	Sorghum	plastid	48.37	49.39
Os12t0615900-01	Rice	nucleus	36.5	49.2
CDY01885	Canola	plastid	23.15	49.06
Zm00001d022257_P002	Maize	plastid	48.07	47.09
HORVU5Hr1G008820.2	Barley	mitochondrion	48.07	46.55
Bra033995.1-P	Field mustard	cytosol	49.55	43.26
HORVU0Hr1G027960.1	Barley	plastid	34.12	34.64

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4B9A7	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	EnsemblPlantsGene:Solyc02g078830.2	EnsemblPlants:Solyc02g078830.2.1	UniParc:UPI00027684A5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:43484372..43487575

Molecular Weight (calculated)

36703.6 Da

IEP (calculated)

7.596

GRAVY (calculated)

-0.215

Length

337 amino acids

Sequence
(BLAST)

001: MSLIAGSYER FIWGFKLRSL KNDQNYELTP LFSFPSHLSP IKCTAVAGSA AVSGGADDTI KIYDLSTCSE IGSLHHSATV TSLSFFTPSS FSFPRNLIAA
101: SEDGSVSIYD ADPFVHLKTV KVHRKAVNSI CIHPSGRLAL TVGRDECMAM VNLVRGRRSF YCRLGKEASL VNFSDGGEKF FMVMDDKISV HESEDAKAIL
201: ELDSKKRVLC ATYGMHGILF TGGEDRSIKA WDITSGKLAY SIEDAHSTRV KGIVVLHKNS DGDAEDHQHI VASASSDGVI RVWDVRMTNK DKPNPLAEVN
301: TKSRLTCLAG SSIKSMKRPQ VGNTTSNGQQ LDAGEES

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.