Factsheet for VIT_08s0007g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078830.2.1	Tomato	nucleus	68.64	68.84
PGSC0003DMT400057752	Potato	cytosol	67.75	67.95
KRH37745	Soybean	nucleus	62.43	66.14
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	66.86	65.51
CDY64887	Canola	cytosol	65.98	65.2
Bra004232.1-P	Field mustard	cytosol	65.38	64.24
CDX96086	Canola	cytosol	65.38	64.24
CDY01817	Canola	cytosol	65.38	64.24
CDY12650	Canola	cytosol	65.38	64.24
KRH12797	Soybean	nucleus	62.13	60.52
GSMUA_Achr4P31530_001	Banana	cytosol	60.65	58.4
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	52.07	54.83
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	52.07	54.49
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	51.78	54.35
EES16386	Sorghum	plastid	52.66	53.94
Os12t0615900-01	Rice	nucleus	38.76	52.4
CDY01885	Canola	plastid	24.26	51.57
Zm00001d022257_P002	Maize	plastid	52.37	51.45
HORVU5Hr1G008820.2	Barley	mitochondrion	50.59	49.14
Bra033995.1-P	Field mustard	cytosol	52.96	46.37
HORVU0Hr1G027960.1	Barley	plastid	36.98	37.65

Protein Annotations

EntrezGene:100257947	wikigene:100257947	Gene3D:2.130.10.10	MapMan:35.2	ProteinID:CBI30543	ProteinID:CBI30543.3
UniProt:D7THM7	EMBL:FN595991	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100257947	wikigene:LOC100257947	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320
SUPFAM:SSF50978	TIGR:TC62679	UniParc:UPI00015CA0BE	ArrayExpress:VIT_08s0007g00490	EnsemblPlantsGene:VIT_08s0007g00490	EnsemblPlants:VIT_08s0007g00490.t01
unigene:Vvi.18365	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002267244	RefSeq:XP_002267244.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:14779925..14783085

Molecular Weight (calculated)

36235.2 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.119

Length

338 amino acids

Sequence
(BLAST)

001: MSIVAGSYEK FIWGFKLKSL KKSQTLTLTP LFSYPSHLSP IKSVAVAGPV AASGGTDDSV KVYDLSSCSE IGTLTDHSGA VTSLSFFSPS SLSFPRNLLS
101: ASDDGSVCIY DADPFVHLKT IAAHKKGVND LSIHPSGKLA LTVGRDSCLA MLNLVRGRRS FYCRLGKEAS LVKFDLSGDK FYMVMEEKVC VHEAEDAKLV
201: FEMENPKRVL CAAPGSNGLL FTGGEDRNIT AWDTASGKVA YCIEDAHSAR VKGIVVLSRN DSGTADDDPY MVASASSDGV IRVWDIRMAN REKPNPLAEA
301: NTKSRLTCLA GSSLKSFKGP QVVSNAPKKE QDAVMEGS

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.