CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	KXG22678	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022257_P002	Maize	plastid	87.88	84.3
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	79.7	81.93
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	79.7	81.68
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	79.09	80.81
Os12t0615900-01	Rice	nucleus	58.18	76.8
HORVU5Hr1G008820.2	Barley	mitochondrion	79.39	75.29
GSMUA_Achr4P31530_001	Banana	cytosol	57.27	53.85
HORVU0Hr1G027960.1	Barley	plastid	53.33	53.01
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	53.94	52.66
KRH37745	Soybean	nucleus	48.79	50.47
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	50.91	48.7
Solyc02g078830.2.1	Tomato	nucleus	49.39	48.37
CDY64887	Canola	cytosol	49.7	47.95
PGSC0003DMT400057752	Potato	cytosol	48.79	47.77
CDX96086	Canola	cytosol	49.7	47.67
Bra004232.1-P	Field mustard	cytosol	49.7	47.67
CDY12650	Canola	cytosol	49.39	47.38
CDY01817	Canola	cytosol	49.39	47.38
KRH12797	Soybean	nucleus	49.7	47.26
CDY01885	Canola	plastid	17.27	35.85
Bra033995.1-P	Field mustard	cytosol	39.39	33.68

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EntrezGene:8084414	UniProt:C5YS24	EnsemblPlants:EES16386	ProteinID:EES16386
ProteinID:EES16386.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320	EnsemblPlantsGene:SORBI_3008G171800	SUPFAM:SSF50978	unigene:Sbi.21579
UniParc:UPI0001A88183	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002442548.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:60548915..60552191

Molecular Weight (calculated)

34392.0 Da

IEP (calculated)

8.281

GRAVY (calculated)

0.078

Length

330 amino acids

Sequence
(BLAST)

001: MALVAGSYER FIWGFSLKTL TSPSASTTAT GASSSETLTL APLFSYPAHT GPVRCVAAAP RAGLAASGGA DDSVRLYDLP SAADLGPLLD PSAAVSALAF
101: YSRGPVPRNL LAACDDGALL LYDADGFALL ATLRAFPRHE AVEGLAVHPS GRVALAVGRA GALAMLNLVR GRRSFTCRLE RPASAVAYAE DKDGGDRFVM
201: AAEEKVAVHD SEDARVIHQM DCGKRVLVMA PAKNGVLYTG GEDRCVTAWD LSSGKVSSRI EGAHATRVKG VVVFDNRKGG SEFCNLIASA SSDGIIRIWD
301: VRAIGNGKPT PLAEANTKAR LTCLSGTSLK

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.