Factsheet for Os12t0615900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	peroxisome

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	83.6	65.11
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	82.8	64.29
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	81.6	63.16
HORVU5Hr1G008820.2	Barley	mitochondrion	82.8	59.48
EES16386	Sorghum	plastid	76.8	58.18
Zm00001d022257_P002	Maize	plastid	77.2	56.1
GSMUA_Achr4P31530_001	Banana	cytosol	59.2	42.17
HORVU0Hr1G027960.1	Barley	plastid	54.0	40.66
KRH37745	Soybean	nucleus	50.0	39.19
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	52.4	38.76
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	50.8	36.81
PGSC0003DMT400057752	Potato	cytosol	49.6	36.8
KRH12797	Soybean	nucleus	50.8	36.6
Solyc02g078830.2.1	Tomato	nucleus	49.2	36.5
CDY01885	Canola	plastid	23.2	36.48
CDY01817	Canola	cytosol	49.6	36.05
CDY64887	Canola	cytosol	49.2	35.96
CDX96086	Canola	cytosol	49.2	35.76
Bra004232.1-P	Field mustard	cytosol	49.2	35.76
CDY12650	Canola	cytosol	48.8	35.47
Bra033995.1-P	Field mustard	cytosol	46.4	30.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	ProteinID:BAF30297.1	ProteinID:BAT18096.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os12g0615900	EnsemblPlants:Os12t0615900-01
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	UniProt:Q0ILW8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0000DD9F6F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

OsWD40-200WD40/YVTN repeat-like domain containing protein. (Os12t0615900-01)

Coordinates

chr12:+:26128861..26130743

Molecular Weight (calculated)

26450.6 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.040

Length

250 amino acids

Sequence
(BLAST)

001: ADLGPLLDPA APVSALAIHS LGPVPRNLLA ASDDGLLHLY DAGEGFPLLA SLRVFPRHRE PADALAVHPT GRVALAVGRS GGLAMLNLLR GRRSFSCRLE
101: HPATAIAYAE DGAGGDRFVM AAEEKVTVHD SEDARIIHEI DCGKRVLAFA PAKKGILYTG GEERGITAWD LSSGKVTSRI EDAHSTRVKG IVVFDDKNDG
201: SELCNLIASA SSDGIIRIWD ARMIAKEKTT PLAEANTKAR LTCLAGSSLN

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.