Factsheet for Bra033995.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029577.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	Bra029577.1-P	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12650	Canola	cytosol	72.54	81.4
Bra004232.1-P	Field mustard	cytosol	69.69	78.2
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	63.47	71.01
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	46.37	52.96
KRH37745	Soybean	nucleus	41.45	50.16
Solyc02g078830.2.1	Tomato	nucleus	43.26	49.55
PGSC0003DMT400057752	Potato	cytosol	43.01	49.26
KRH12797	Soybean	nucleus	41.97	46.69
Os12t0615900-01	Rice	nucleus	30.05	46.4
GSMUA_Achr4P31530_001	Banana	cytosol	38.6	42.45
EES16386	Sorghum	plastid	33.68	39.39
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	32.38	38.94
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	32.12	38.39
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	31.87	38.2
Zm00001d022257_P002	Maize	plastid	33.94	38.08
HORVU5Hr1G008820.2	Barley	mitochondrion	31.61	35.06
HORVU0Hr1G027960.1	Barley	plastid	23.58	27.41

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlantsGene:Bra033995	EnsemblPlants:Bra033995.1	EnsemblPlants:Bra033995.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EYV3
PFAM:PF00400	PRINTS:PR01217	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002545F19	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT1G65030 (E=2e-125) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA02:-:10362244..10364765

Molecular Weight (calculated)

41142.6 Da

IEP (calculated)

9.611

GRAVY (calculated)

-0.461

Length

386 amino acids

Sequence
(BLAST)

001: MNHQLIGLSD HFPNQMNGSW KKANFKPNSF SRAKCDLNKW PAPTRDSYGV SSSNPQSTTP TPTPSPSPLS SPTLPTSPPS PPSLAPAPPR LPAAPTTPST
101: STTSLPPPPS APPPPPTPPP HNHPPASITA LSFYTPSSLS SPRTLIPAAA DGSVAIFDTD PFVLLKSFRP HKKAVNDLSI HPSGKLALAV YRDECFAMLN
201: LVRGKRSFCC RLGHEASLVK FDPSGERFFM VVNSKVGVHQ SEDAKLLLEL DNGSRKPILC ASPGDSGTLF TAGEDRAITA WDTNSGKLAY AIQDAHPARI
301: KGVVTLTRND SESASEDPYL VASASSDGII RVWDMRMAAK ENAKPLAETN TKSRLTCLAG SALKSMRRPQ NGNQKAQQLE EGANSA

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.