Factsheet for TraesCS5D01G041900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT1G65030.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT1G65030.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT1G65030.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT1G65030.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	96.57	95.98
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	96.26	95.96
HORVU5Hr1G008820.2	Barley	mitochondrion	94.08	86.78
Os12t0615900-01	Rice	nucleus	65.11	83.6
EES16386	Sorghum	plastid	81.93	79.7
Zm00001d022257_P002	Maize	plastid	79.75	74.42
HORVU0Hr1G027960.1	Barley	plastid	62.62	60.54
GSMUA_Achr4P31530_001	Banana	cytosol	59.81	54.7
KRH37745	Soybean	nucleus	52.96	53.29
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	54.83	52.07
PGSC0003DMT400057752	Potato	cytosol	52.96	50.45
Solyc02g078830.2.1	Tomato	nucleus	52.96	50.45
KRH12797	Soybean	nucleus	53.58	49.57
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	51.09	47.54
CDY64887	Canola	cytosol	49.84	46.78
CDX96086	Canola	cytosol	49.84	46.51
Bra004232.1-P	Field mustard	cytosol	49.84	46.51
CDY12650	Canola	cytosol	49.53	46.22
CDY01817	Canola	cytosol	49.53	46.22
CDY01885	Canola	plastid	19.0	38.36
Bra033995.1-P	Field mustard	cytosol	38.94	32.38

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5D01G041900
EnsemblPlants:TraesCS5D01G041900.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:42041358..42043223

Molecular Weight (calculated)

33639.1 Da

IEP (calculated)

7.583

GRAVY (calculated)

0.048

Length

321 amino acids

Sequence
(BLAST)

001: MALVAGSYER FIWGFSLKAL AASSDEAQAL APLFSYPAHA GPIRCVAAAP RAGLAASGGA DDSIRLYDLR AAADLGPLLD PSAAVSALAF HSIGPVPRNL
101: LAASDDGLLH LYDADGFALL TSLRVFPRGR EAADALAVHP SGRVALAVGR AGGLSMVNLL RGRRSFTCRL ERPASAVAYA QDAAGGDRFV MAAEEKVTVH
201: DSEDARIIHE MRCDKRVLAL APSKNGILYT GGEDRGITAW DLTSGKVSSR IEGAHSTRVK GIVVFDDRND GSESSTLVAS ASSDGIIRIW DVRMIGSEKP
301: TPLAEANTKA RLTCLAGTSL K

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.