CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	CDY68484	AT4G05420.1	18223036
AT1G65030.1	CDY69266	AT4G05420.1	18223036
AT1G65030.1	CDY69930	AT4G05420.1	18223036
AT1G65030.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12650	Canola	cytosol	97.08	96.51
CDX96086	Canola	cytosol	96.78	96.22
CDY01817	Canola	cytosol	96.78	96.22
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	90.35	89.57
CDY01885	Canola	plastid	35.09	75.47
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	65.2	65.98
KRH37745	Soybean	nucleus	58.19	62.38
Solyc02g078830.2.1	Tomato	nucleus	60.23	61.13
PGSC0003DMT400057752	Potato	cytosol	60.23	61.13
KRH12797	Soybean	nucleus	58.48	57.64
GSMUA_Achr4P31530_001	Banana	cytosol	53.8	52.42
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	46.78	49.84
EES16386	Sorghum	plastid	47.95	49.7
TraesCS5B01G033700.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	46.78	49.69
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	46.78	49.54
Os12t0615900-01	Rice	nucleus	35.96	49.2
Zm00001d022257_P002	Maize	plastid	47.95	47.67
HORVU5Hr1G008820.2	Barley	mitochondrion	45.61	44.83
HORVU0Hr1G027960.1	Barley	plastid	32.16	33.13

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	UniProt:A0A078JHK3	EnsemblPlants:CDY64887	ProteinID:CDY64887	ProteinID:CDY64887.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00043803001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDC03D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC02g46010DBnaC02g46010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHK3]

Coordinates

chrLK034589:-:25823..27525

Molecular Weight (calculated)

36835.7 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.221

Length

342 amino acids

Sequence
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDADNQTLT LSPLFSYPSH LSSITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHTASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLSIHP SGKLALAVYR DECFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFFMVV NTKVGVHQSE
201: DAKLLLELDN GSRKRILCAS PGDSGTLFTA GEDRAITAWD TNSGKLAYAI QDAHPARIKG VVTRNDSEGA SEDPYLVASA SSDGIIRVWD MRMAAKENAK
301: PLAETNTKSR LTCLAGSALK SMRRPQIGNQ KPQKLEEGPN SA

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.