Factsheet for TraesCS5B01G033700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi

Predictor Summary:

cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65030.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT1G65030.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT1G65030.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT1G65030.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT1G65030.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G041900.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.96	96.26
TraesCS5A01G033600.1	Wheat	mitochondrion, plastid	94.41	94.12
HORVU5Hr1G008820.2	Barley	mitochondrion	92.86	85.92
Os12t0615900-01	Rice	nucleus	64.29	82.8
EES16386	Sorghum	plastid	81.68	79.7
Zm00001d022257_P002	Maize	plastid	79.5	74.42
HORVU0Hr1G027960.1	Barley	plastid	61.49	59.64
GSMUA_Achr4P31530_001	Banana	cytosol	59.32	54.42
KRH37745	Soybean	nucleus	52.8	53.29
VIT_08s0007g00490.t01	Wine grape	mitochondrion, plastid	54.35	51.78
KRH12797	Soybean	nucleus	53.73	49.86
PGSC0003DMT400057752	Potato	cytosol	51.86	49.55
Solyc02g078830.2.1	Tomato	nucleus	51.86	49.55
AT1G65030.1	Thale cress	cytosol, nucleus, plastid	50.93	47.54
CDY64887	Canola	cytosol	49.69	46.78
CDX96086	Canola	cytosol	49.69	46.51
Bra004232.1-P	Field mustard	cytosol	49.69	46.51
CDY01817	Canola	cytosol	49.38	46.22
CDY12650	Canola	cytosol	49.07	45.93
CDY01885	Canola	plastid	18.63	37.74
Bra033995.1-P	Field mustard	cytosol	38.2	31.87

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44675	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5B01G033700
EnsemblPlants:TraesCS5B01G033700.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:36733897..36735923

Molecular Weight (calculated)

33706.2 Da

IEP (calculated)

7.182

GRAVY (calculated)

0.055

Length

322 amino acids

Sequence
(BLAST)

001: MALVAGSYER FIWGFSLKAL AASAAEEAQP LAPLFSYPAH AGPIRCVAAA PRAGLAASGG ADDSIRLYDL RAAADLGPLL DPSAAVSALA FHSIGPVPRN
101: LLAASDDGLL HLYDADGFAL LTSLRVFPRG REAADALAVH PSGRVALAVG RAGGLSMVNL LRGRRSFTCR LERAASTVAY AEDAAGGDRF VMAAEEKVTV
201: HDSEDARIIH EMPCDKRVLA LAPSKNGILY TGGEDRGITA WDLSTGKVSS RIEGAHSTRV KGIVVFDNRN DGSESSTLVA SASSDGIIRI WDVRMIGNEK
301: PTPLAEANTK ARLTCLAGTS LK

Best Arabidopsis Sequence Match ( AT1G65030.1 )
(BLAST)

001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE

Arabidopsis Description

At1g65030 [Source:UniProtKB/TrEMBL;Acc:Q5XEV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.