Factsheet for AT4G21100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	91.18	91.18
KRH59213	Soybean	cytosol, plasma membrane, plastid	41.27	89.8
CDY57060	Canola	cytosol, nucleus, plasma membrane	90.53	89.3
VIT_10s0003g04360.t01	Wine grape	cytosol, nucleus, plasma membrane	87.87	87.79
CDX76416	Canola	cytosol	90.26	87.06
Solyc02g021650.2.1	Tomato	nucleus	85.94	85.39
KRH43086	Soybean	nucleus	15.72	84.24
KRH25071	Soybean	nucleus	46.05	83.92
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	83.0	82.92
KRH59212	Soybean	cytosol, nucleus	39.71	81.05
KXG22678	Sorghum	nucleus	80.33	80.26
Zm00001d039165_P046	Maize	nucleus	80.51	80.15
TraesCS1B01G473400.1	Wheat	nucleus	79.78	79.63
TraesCSU01G002300.1	Wheat	golgi, plastid	79.6	79.45
TraesCS1D01G445700.1	Wheat	unclear	79.5	79.36
Bra020884.1-P	Field mustard	cytosol	90.07	76.44
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	76.65	75.89
HORVU1Hr1G094530.1	Barley	nucleus, plastid	79.23	75.35
TraesCS3A01G210100.2	Wheat	nucleus	64.98	65.04
HORVU7Hr1G056620.1	Barley	cytosol	6.99	64.96
TraesCS3B01G240600.1	Wheat	cytosol	61.31	64.51
HORVU3Hr1G050820.11	Barley	plastid	65.07	62.54
HORVU7Hr1G056610.1	Barley	cytosol	9.28	50.75
PGSC0003DMT400009595	Potato	nucleus	10.48	43.68
AT3G55220.1	Thale cress	nucleus, vacuole	23.25	20.84
AT3G55200.1	Thale cress	nucleus, vacuole	23.25	20.84
AT3G11960.3	Thale cress	nucleus	18.38	14.5

Protein Annotations

MapMan:14.6.1.3.1	MapMan:19.2.2.8.3.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.2	Gene3D:3.30.980.30	EntrezGene:827857
ProteinID:AEE84401.1	EMBL:AK220648	EMBL:AK229805	ArrayExpress:AT4G21100	EnsemblPlantsGene:AT4G21100	RefSeq:AT4G21100
TAIR:AT4G21100	RefSeq:AT4G21100-TAIR-G	EnsemblPlants:AT4G21100.1	TAIR:AT4G21100.1	Unigene:At.32663	ProteinID:CAA17529.1
ProteinID:CAB79110.1	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil	InterPro:DDB1	Symbol:DDB1B	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006289	GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010017	GO:GO:0016567	GO:GO:0019538	GO:GO:0031461	GO:GO:0043161	InterPro:IPR015943
RefSeq:NP_193842.1	UniProt:O49552	PFAM:PF03178	PFAM:PF10433	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR10644	PANTHER:PTHR10644:SF3
SUPFAM:SSF50978	UniParc:UPI0000162AE4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

DDB1BDNA damage-binding protein 1b [Source:UniProtKB/Swiss-Prot;Acc:O49552]

Coordinates

chr4:-:11258759..11265605

Molecular Weight (calculated)

121186.0 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.086

Length

1088 amino acids

Sequence
(BLAST)

0001: MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.