Factsheet for AT3G55200.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

nucleus 5
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G55220.1	Thale cress	nucleus, vacuole	100.0	100.0
CDY36325	Canola	nucleus, plastid, vacuole	93.49	95.62
CDY36309	Canola	cytosol, nucleus, plastid	93.0	95.6
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	95.47	95.47
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	89.46	89.46
KRH36214	Soybean	nucleus	87.64	87.64
KRG92964	Soybean	nucleus	87.4	87.4
PGSC0003DMT400077607	Potato	nucleus	86.24	86.46
Solyc04g010260.2.1	Tomato	nucleus	82.29	85.02
GSMUA_Achr9P30340_001	Banana	cytosol	48.6	84.29
GSMUA_Achr6P19780_001	Banana	cytosol	65.24	81.06
Os02t0137400-01	Rice	nucleus	56.84	80.42
HORVU6Hr1G019130.1	Barley	mitochondrion	80.56	79.71
TraesCS6B01G135400.1	Wheat	unclear	80.15	79.3
TraesCS6D01G095000.1	Wheat	mitochondrion	80.07	79.22
TraesCS6A01G107200.1	Wheat	nucleus	79.98	79.14
Zm00001d015208_P003	Maize	extracellular, plasma membrane	79.98	79.01
EES04483	Sorghum	mitochondrion	79.98	78.81
VIT_15s0107g00230.t01	Wine grape	nucleus	8.15	76.15
VIT_15s0107g00220.t01	Wine grape	cytosol	8.32	69.66
AT4G21100.1	Thale cress	nucleus	20.84	23.25
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	20.43	22.79
AT3G11960.3	Thale cress	nucleus	18.78	16.53

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	EntrezGene:824686	EntrezGene:824688	UniProt:A0A178VN71	ProteinID:AEE79352.1
ProteinID:AEE79354.1	EMBL:AK220805	ProteinID:ANM65660.1	ProteinID:ANM65661.1	ArrayExpress:AT3G55200	EnsemblPlantsGene:AT3G55200
RefSeq:AT3G55200	TAIR:AT3G55200	RefSeq:AT3G55200-TAIR-G	EnsemblPlants:AT3G55200.1	TAIR:AT3G55200.1	ProteinID:CAB75754.1
ProteinID:CAB75756.1	InterPro:Cleavage/polyA-sp_fac_asu_C	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0007275	GO:GO:0008150	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009555
GO:GO:0009791	GO:GO:0009846	GO:GO:0009856	GO:GO:0009908	GO:GO:0048481	GO:GO:0055046
InterPro:IPR015943	RefSeq:NP_001319757.1	RefSeq:NP_001327611.1	RefSeq:NP_567015.1	RefSeq:NP_567016.1	ProteinID:OAP06523.1
UniProt:P0DKL4	UniProt:P0DKL6	PFAM:PF03178	PFAM:PF10433	PO:PO:0000293	PO:PO:0009001
PO:PO:0009005	PO:PO:0009049	PO:PO:0025034	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1	InterPro:Quino_amine_DH_bsu
SUPFAM:SSF50969	SUPFAM:SSF50978	UniParc:UPI00000AA404	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]

Coordinates

chr3:+:20460350..20465201

Molecular Weight (calculated)

134974.0 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.188

Length

1214 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.