Factsheet for Solyc04g010260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
mitochondrion: 26471654
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26471654 doi

O López-Vidal, D Camejo, F Rivera-Cabrera, M Konigsberg, JM Villa-Hernández, JA Mendoza-Espinoza, LJ Pérez-Flores, F Sevilla, A Jiménez, F Díaz de León-Sánchez

Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077607	Potato	nucleus	97.36	94.47
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	89.53	86.66
KRH36214	Soybean	nucleus	87.83	85.01
KRG92964	Soybean	nucleus	87.15	84.35
CDY36309	Canola	cytosol, nucleus, plastid	83.06	82.64
CDY36325	Canola	nucleus, plastid, vacuole	83.15	82.31
AT3G55220.1	Thale cress	nucleus, vacuole	85.02	82.29
AT3G55200.1	Thale cress	nucleus, vacuole	85.02	82.29
Bra034172.1-P	Field mustard	nucleus, plastid, vacuole	84.85	82.13
GSMUA_Achr9P30340_001	Banana	cytosol	46.55	78.14
GSMUA_Achr6P19780_001	Banana	cytosol	64.6	77.69
EES04483	Sorghum	mitochondrion	80.85	77.11
TraesCS6B01G135400.1	Wheat	unclear	80.51	77.1
TraesCS6D01G095000.1	Wheat	mitochondrion	80.43	77.02
TraesCS6A01G107200.1	Wheat	nucleus	80.34	76.94
HORVU6Hr1G019130.1	Barley	mitochondrion	80.09	76.69
Zm00001d015208_P003	Maize	extracellular, plasma membrane	80.09	76.57
Os02t0137400-01	Rice	nucleus	55.74	76.34
VIT_15s0107g00230.t01	Wine grape	nucleus	8.0	72.31
VIT_15s0107g00220.t01	Wine grape	cytosol	8.6	69.66
Solyc02g021650.2.1	Tomato	nucleus	20.85	22.37
Solyc10g080630.1.1	Tomato	nucleus	18.3	15.43

Protein Annotations

MapMan:16.4.1.2.4.3	Gene3D:2.130.10.10	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR015943	UniProt:K4BPI0	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644	PANTHER:PTHR10644:SF1
SUPFAM:SSF50978	SUPFAM:SSF63829	EnsemblPlantsGene:Solyc04g010260.2	EnsemblPlants:Solyc04g010260.2.1	UniParc:UPI0002765E17	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:3583577..3588628

Molecular Weight (calculated)

130443.0 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.165

Length

1175 amino acids

Sequence
(BLAST)

0001: MYLYSLTLQQ PTGIICAING SFSGGKVQEI VVARGKVLDL LRPDDNGKLQ TLLSVEIFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILD YNKEKNCFDK
0101: VHQETFGKSG CRRIVPGQYL AIDPKGRAVM IGACEKQKLV YVLNRDTAAR LTISSPLEAH KSHTITFSIC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: NEAQKHLTFY ELDLGLNHVS RKWSEQVDNG ANLLVTVPGG GDGPSGVLVC AENFVIYKNQ GHPDVRAVIP RRVDLPAERG VLIVSAAMHK QKTMFFFLLQ
0301: TEYGDIFKVT LDHDNDRVNE LKIKYFDTIP VTSSLCVLKS GFLFASSEFG NHALYQFQAI GDDPDVEASS STLMETEEGF QPVFFQPRKL KNLVRIDQIE
0401: SLMPIMDMKI VNLFEEETPQ IFSLCGRGPR SSLRILRPGL AVSEMAVSQL PGVPSAVWTV KKNVNDEFDA YIVVSFANAT LVLSIGETVE EVSDSGFLDT
0501: TPSLSVSLIG DDSLMQVHPS GIRHIREDGR INEWRTPGKR TIVKVGSNRL QVVIALSGGE LIYFEVDMTG QLMEVEKHEM SGDVACLDIA PVPEGRQRSR
0601: FLAVGSYDNT IRILSLDPDD CMQVLSLQSV SSPPESLLFL EVQASVGGED GADHPASLFL NAGLQNGVLF RTVVDMNGGQ LSDARSRFLG LRAPKLFSIV
0701: VRGRRAMLCL SSRPWLGYIH QGHFLLTPLS YESLEFAASF SSDQCAEGVV AVAGDALRVF TIERLGETFN ETAIPLRYTP RRFVLQPKKK MVIMIESDQG
0801: AYTAEEREAA KKECFEAAGN SENGNAEQME NGEDEDDSDP LSDEQYGYPK SESGRWVSCI RVLDPRTMQT TCLLELQDNE AAFSICTVNF HDKEHGALLA
0901: VGTAKGLQFW PKKSFEAAYI HIYKFKEDGK VLELLHKTQV DGVPLALCQF QGRLLAGIGS VLRLYDLGKK RLLRKCENKL FPNSITAIHT YRDRIYVGDM
1001: QESFHYCKYR RDENQLYIFA DDTVPRWLTA AQHVDFDTVA GADKFGNIYF ARLSQDVSDE IEEDPTGGKI KWEQGKLNGA PNKLEEIVQF HVGDVVSCLQ
1101: KASLIPGGGE CIIYGTVMGS VGAMLPFTSR DDVDFFSHLE MHLRQEFPPL CGRDHMAYRS AYFPVKAGCN RWRLM

Best Arabidopsis Sequence Match ( AT3G55200.2 )
(BLAST)

0001: MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK
0101: VHQETFGKSG CRRIVPGQYV AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI FAAIELDYSE ADQDPTGQAA
0201: SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ
0301: TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE
0401: SLMPLMDMKV LNIFEEETPQ IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT LVLSIGEQVE EVNDSGFLDT
0501: TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR
0601: FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS
0701: VRGRSAMLCL SSRPWLGYIH RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP RKFVLHPKRK LLVIIESDQG
0801: AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT
0901: LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV
1001: GDIQESFHYC KYRRDENQLY IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL NGAPNKVDEI VQFHVGDVVT
1101: CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA
1201: EILKKLEDAR NKII

Arabidopsis Description

SAP130ASpliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.