Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.4 | 66.84 |
| KRH68075 | Soybean | nucleus, plastid | 59.01 | 59.26 |
| KRG96340 | Soybean | nucleus, plastid | 58.0 | 58.26 |
| CDY08477 | Canola | nucleus | 56.64 | 58.01 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 55.56 | 57.72 |
| CDX73841 | Canola | nucleus, plastid | 55.56 | 57.72 |
| AT3G11960.3 | Thale cress | nucleus | 56.57 | 57.14 |
| CDY01074 | Canola | nucleus | 55.35 | 56.73 |
| CDY00750 | Canola | nucleus | 54.41 | 56.61 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 53.63 | 55.33 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 25.7 | 53.75 |
| Bra034797.1-P | Field mustard | nucleus | 55.42 | 53.17 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 41.42 | 47.73 |
| KXG34639 | Sorghum | plastid | 46.45 | 47.54 |
| Zm00001d019115_P048 | Maize | plastid | 45.87 | 47.12 |
| TraesCS2A01G243300.3 | Wheat | plastid | 45.94 | 47.02 |
| TraesCS2D01G245600.6 | Wheat | plastid | 45.94 | 47.02 |
| HORVU2Hr1G055870.14 | Barley | plastid | 45.8 | 46.91 |
| Os07t0203800-01 | Rice | cytosol, plastid | 7.39 | 36.65 |
| Solyc04g010260.2.1 | Tomato | nucleus | 15.43 | 18.3 |
| Solyc02g021650.2.1 | Tomato | nucleus | 14.21 | 18.08 |
Protein Annotations
| EnsemblPlants:Solyc10g080630.1.1 | EnsemblPlantsGene:Solyc10g080630.1 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | PFAM:PF03178 | PFAM:PF10433 |
| SEG:seg | UniParc:UPI00027695FE | UniProt:K4D2V3 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr10:-:61856140..61869046
Molecular Weight (calculated)
152604.0 Da
IEP (calculated)
5.376
GRAVY (calculated)
0.091
Length
1393 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVSEEESPS SSSAGSSKSR SSASHGASYL AKTVLRGSVV LQVVYGRIRS PTSYDVVFGK ETSIELVIID EDGVVQSICE QPVFGIIKDI AVLPWNEKFC
0101: VGSPQLLGRD LLVVLSDSGK LSVLRFCNEM HRFFAVTHVQ LSSPGNPTDQ IGRMLAVDSN GCFIAASAYE DSLALFSRSA SVGSDIFDKR IFCPTDKQGK
0201: IKTANGFTSI CGTIWSMCFI SKDVQPNKDY NPILAILLNR RRSYRSEIVL IEWNTKEHSL YVVYQCSELG PLAHHIVDIP HSYGLVLVLR AGDAIVMDFK
0301: VPHSPCILYR ISLNFTPPSV EEPNFVRETI RIPDIIDEEG IYSVAASALL ELSDLNKNDP MNIDDDSNVK PGSNFVCSWS WNPGNENSPR MIFCADSGEL
0401: FLIDFLFDSD GLKVSLSDSL YKTLPAKALL WVRGGFLAVI IEMGDGMVLK VEDGRLDYRS PIQNIAPILD MSVVDYHDEK HDQMFACCGM APEGSLRVIR
0501: SGISVEKLLK TSPIYQGITG TWTVKMKLAD SYHSFLVLSF VEETRVLSVG VSFSDVTDFM GFQPDVCTLA CGLVGDGLLV QIHQTAVRLC VPIAAAHPDG
0601: IDSASPTFTS WSPDNMTISL GAVGPNLIVV ATSSPCYLFI LGIRTVSARH YEIYQLQHVK LQDELSCIAI PQRLLEQTSF ISRTSNRSGV RLDSLPVGLD
0701: ISNTFVIGTH KPSVEVLSFT SDKGLSVLAV GSITLTNTLG TTVSGCIPQD IRLVLVDRLY VLSGLRNGML LRFEWPSISA IYSLVSPGLQ TFDNSCMANC
0801: ISSSTSASQN FRSQPTQVTS LLDKTKDFPV YLQLVAVRRI GITPVFLIPL NDSLDADVIA LSDRPWLLQT ARHSLSYTSI SFPPSTHVTP VCSTECPKGI
0901: IFVAENSLHL VEMVPSKRLN VQKFHFGGTP RKVLYHSDSR LLLVLRTDLS DDLCSSDVCC IDPLSGSVLS SFKFELGEIG KCMELVKAGN EQVLVVGTGL
1001: SSGPAIMPSG EAESTKGRLI VLCVEQMQNS DSGSIAFSSR AGSSSQRTSP FREVGGYAAE QLSSSSICSS PDDNSCDGIK LEESEAWHLR LGYSTTWPGM
1101: VLAVCPYLDR FFLASAANCF YVCGFPNDNA QRVRRLAVGR TRFMIMTLTA HFTRIAVGDC RDGILFYSYQ EDSRKLDQIY CDPVQRLVSD CTLMDGDTAA
1201: VSDRKGSFAI LSCLNYMEDN FNSPERNLAQ TCSFYMGEIA IRIRKGSFSY KLPADDALRG CQATSIVGDI SQNSIMASTL LGSIIIFIPL TREEYDLLEA
1301: VQARLVIHPL TAPILGNDHT EYRCRGSMAR VPKALDGDML AQFLELTSMQ QEAVLALPLG AQNTIMFNSK QSPDPITVNQ VVRLLERIHY ALN
0101: VGSPQLLGRD LLVVLSDSGK LSVLRFCNEM HRFFAVTHVQ LSSPGNPTDQ IGRMLAVDSN GCFIAASAYE DSLALFSRSA SVGSDIFDKR IFCPTDKQGK
0201: IKTANGFTSI CGTIWSMCFI SKDVQPNKDY NPILAILLNR RRSYRSEIVL IEWNTKEHSL YVVYQCSELG PLAHHIVDIP HSYGLVLVLR AGDAIVMDFK
0301: VPHSPCILYR ISLNFTPPSV EEPNFVRETI RIPDIIDEEG IYSVAASALL ELSDLNKNDP MNIDDDSNVK PGSNFVCSWS WNPGNENSPR MIFCADSGEL
0401: FLIDFLFDSD GLKVSLSDSL YKTLPAKALL WVRGGFLAVI IEMGDGMVLK VEDGRLDYRS PIQNIAPILD MSVVDYHDEK HDQMFACCGM APEGSLRVIR
0501: SGISVEKLLK TSPIYQGITG TWTVKMKLAD SYHSFLVLSF VEETRVLSVG VSFSDVTDFM GFQPDVCTLA CGLVGDGLLV QIHQTAVRLC VPIAAAHPDG
0601: IDSASPTFTS WSPDNMTISL GAVGPNLIVV ATSSPCYLFI LGIRTVSARH YEIYQLQHVK LQDELSCIAI PQRLLEQTSF ISRTSNRSGV RLDSLPVGLD
0701: ISNTFVIGTH KPSVEVLSFT SDKGLSVLAV GSITLTNTLG TTVSGCIPQD IRLVLVDRLY VLSGLRNGML LRFEWPSISA IYSLVSPGLQ TFDNSCMANC
0801: ISSSTSASQN FRSQPTQVTS LLDKTKDFPV YLQLVAVRRI GITPVFLIPL NDSLDADVIA LSDRPWLLQT ARHSLSYTSI SFPPSTHVTP VCSTECPKGI
0901: IFVAENSLHL VEMVPSKRLN VQKFHFGGTP RKVLYHSDSR LLLVLRTDLS DDLCSSDVCC IDPLSGSVLS SFKFELGEIG KCMELVKAGN EQVLVVGTGL
1001: SSGPAIMPSG EAESTKGRLI VLCVEQMQNS DSGSIAFSSR AGSSSQRTSP FREVGGYAAE QLSSSSICSS PDDNSCDGIK LEESEAWHLR LGYSTTWPGM
1101: VLAVCPYLDR FFLASAANCF YVCGFPNDNA QRVRRLAVGR TRFMIMTLTA HFTRIAVGDC RDGILFYSYQ EDSRKLDQIY CDPVQRLVSD CTLMDGDTAA
1201: VSDRKGSFAI LSCLNYMEDN FNSPERNLAQ TCSFYMGEIA IRIRKGSFSY KLPADDALRG CQATSIVGDI SQNSIMASTL LGSIIIFIPL TREEYDLLEA
1301: VQARLVIHPL TAPILGNDHT EYRCRGSMAR VPKALDGDML AQFLELTSMQ QEAVLALPLG AQNTIMFNSK QSPDPITVNQ VVRLLERIHY ALN
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.