Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08477 | Canola | nucleus | 87.81 | 93.75 |
| Bra001431.1-P | Field mustard | nucleus, plastid | 75.48 | 81.73 |
| AT3G11960.3 | Thale cress | nucleus | 76.79 | 80.86 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 58.4 | 62.22 |
| KRH68075 | Soybean | nucleus, plastid | 54.75 | 57.32 |
| KRG96340 | Soybean | nucleus, plastid | 53.86 | 56.38 |
| Solyc10g080630.1.1 | Tomato | nucleus | 53.17 | 55.42 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 49.24 | 52.96 |
| KXG34639 | Sorghum | plastid | 44.77 | 47.76 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 21.76 | 47.45 |
| Zm00001d019115_P048 | Maize | plastid | 44.15 | 47.27 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 38.64 | 46.4 |
| TraesCS2A01G243300.3 | Wheat | plastid | 43.25 | 46.14 |
| TraesCS2D01G245600.6 | Wheat | plastid | 43.25 | 46.14 |
| HORVU2Hr1G055870.14 | Barley | plastid | 42.84 | 45.74 |
| Os07t0203800-01 | Rice | cytosol, plastid | 6.75 | 34.88 |
| Bra034172.1-P | Field mustard | nucleus, plastid, vacuole | 16.25 | 19.44 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 12.81 | 17.13 |
| Bra020884.1-P | Field mustard | cytosol | 13.15 | 14.9 |
Protein Annotations
| EnsemblPlants:Bra034797.1 | EnsemblPlants:Bra034797.1-P | EnsemblPlantsGene:Bra034797 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:Cleavage/polyA-sp_fac_asu_C | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | PFAM:PF03178 |
| PFAM:PF10433 | SEG:seg | UniParc:UPI000254754F | UniProt:M4F151 | MapMan:35.1 | : |
Description
AT3G11960 (E=0.0) | cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein
Coordinates
chrA05:-:21451618..21460230
Molecular Weight (calculated)
159992.0 Da
IEP (calculated)
5.154
GRAVY (calculated)
0.005
Length
1452 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAPEDESSA QSQSSSAAAA APTPPPPSSA GDHYLAKCVL RPSVVLQVAY GYFRSRSSRD IVFGKETCIE LAVIGEDGVV ESVCEQNVFG TIKDLAVIPQ
0101: SNKPYSNSFQ MGKDLLAVLS DSGKLSFLSF SNEMHRFSPI QHVQLSSPGN SRDQLGRMLT VDSSGLFLAV SAYHDRFALF SLSTSSMADI ILKRIFYPSE
0201: DGGKASSEQA VSGTIWSMCF ISKGFNESMD YDPVLAIVLN RKGSLLNELV LFRWNVKEES ICLISEYVEA GALAHSIVEV PHSSGFAFLL RMGDALLMDL
0301: RDPQNPCCLV RTSLDLVPAS LVEEQFLEES CRVQDGDDEG LFNVAACALL ELRDYDPMFI DNESDNGKLS SKHVSSWTWE PPEHNHNPRM IICLDDGEFF
0401: MFELIYEDDG VKVNVSECLY KGLPCKEILW VEGEFLATFA EMADGTVFKV GTEKLHWMSS IQNIAPILDF SVVDDQNEKR DQIFACCGVT PEGSLRIIRS
0501: GINVEKLLKT APVYQGITGT WTVKMKLTDV YHSFLVLSFV EETRVLSVGL SFKDVTDSVG FQPDVCTLAC GLVADGLLVQ IHRDAIRLCM PTVDAHVDGS
0601: PVSSPFFSSW FPENVSISLG AVGENLIVVS TSNPCFLSIL GVKSVSSQCC EIYEIQRVTL QYEVSCISVP QKYIGKKRPR ACAVDNSCSK AAIPSGMERG
0701: YTFLIGTHKP SVEVVSFSEE DGGGVRVLAS GRVSLTNTMG TVISGCIPQD VRLVLVDQVY VLSGLRNGML LRFEWPPFSH SSGHCKEEMD SVASDLLLIA
0801: TRRIGITPVF LVPLSDSLDS DIIALSDRAW LLQTARQSLS YTSISFQPST HATPVCSPEC PQGILFVAEN CLHLVEMVHS KRLNAQKFHL GGTPRKVIYH
0901: SESKLLIVMR TDLYDACTSD ICCVDPLSGS VLSSYKLKPG ETGKSMELVR VGNEQVLVVG TSLSFGPAIL PSGEAESTRG RLIILCLEHT HNSDSGSMAI
1001: CSKAGSSSQR TSPFRDVVGC TTEQLSSSSL CSSPDDNSYD GIKIDESETW HLRLACATTW PGMVLAICPY LDHFFLASAG NAFYVCGFPN DSPERMKRFA
1101: VGRTRFMITS LRTYFTRIVV GDCRDGVLFY SYHEDVKKLH QIYCDPAQRL VGDCFLMDAN SVAVSDRKGS IAILSCKDHS DFEYSNPESN LNLNCAYHMG
1201: EIAMAIKKGC NIYKLPADDV LRSYGLSKSI DAADDTIIAG TLLGSIFVFA PISREEYELL EAVQAKLVVH PLTAPVLGND HKEFRGRENP SQATKILDGD
1301: MLAQFLELTN RQQEVQKSLE KNIQSHRSCL CVLEGRILKH VPRSWDDSNS RLRFSAMFAE LTDRIVPVAV NCRFGFFQRP LRSWNGLYLI FLFMNLTLEY
1401: EITFLNQLPL EATCSSGNSP YDVANHVQRI LAETLGFECT QLGRKAKYNI LT
0101: SNKPYSNSFQ MGKDLLAVLS DSGKLSFLSF SNEMHRFSPI QHVQLSSPGN SRDQLGRMLT VDSSGLFLAV SAYHDRFALF SLSTSSMADI ILKRIFYPSE
0201: DGGKASSEQA VSGTIWSMCF ISKGFNESMD YDPVLAIVLN RKGSLLNELV LFRWNVKEES ICLISEYVEA GALAHSIVEV PHSSGFAFLL RMGDALLMDL
0301: RDPQNPCCLV RTSLDLVPAS LVEEQFLEES CRVQDGDDEG LFNVAACALL ELRDYDPMFI DNESDNGKLS SKHVSSWTWE PPEHNHNPRM IICLDDGEFF
0401: MFELIYEDDG VKVNVSECLY KGLPCKEILW VEGEFLATFA EMADGTVFKV GTEKLHWMSS IQNIAPILDF SVVDDQNEKR DQIFACCGVT PEGSLRIIRS
0501: GINVEKLLKT APVYQGITGT WTVKMKLTDV YHSFLVLSFV EETRVLSVGL SFKDVTDSVG FQPDVCTLAC GLVADGLLVQ IHRDAIRLCM PTVDAHVDGS
0601: PVSSPFFSSW FPENVSISLG AVGENLIVVS TSNPCFLSIL GVKSVSSQCC EIYEIQRVTL QYEVSCISVP QKYIGKKRPR ACAVDNSCSK AAIPSGMERG
0701: YTFLIGTHKP SVEVVSFSEE DGGGVRVLAS GRVSLTNTMG TVISGCIPQD VRLVLVDQVY VLSGLRNGML LRFEWPPFSH SSGHCKEEMD SVASDLLLIA
0801: TRRIGITPVF LVPLSDSLDS DIIALSDRAW LLQTARQSLS YTSISFQPST HATPVCSPEC PQGILFVAEN CLHLVEMVHS KRLNAQKFHL GGTPRKVIYH
0901: SESKLLIVMR TDLYDACTSD ICCVDPLSGS VLSSYKLKPG ETGKSMELVR VGNEQVLVVG TSLSFGPAIL PSGEAESTRG RLIILCLEHT HNSDSGSMAI
1001: CSKAGSSSQR TSPFRDVVGC TTEQLSSSSL CSSPDDNSYD GIKIDESETW HLRLACATTW PGMVLAICPY LDHFFLASAG NAFYVCGFPN DSPERMKRFA
1101: VGRTRFMITS LRTYFTRIVV GDCRDGVLFY SYHEDVKKLH QIYCDPAQRL VGDCFLMDAN SVAVSDRKGS IAILSCKDHS DFEYSNPESN LNLNCAYHMG
1201: EIAMAIKKGC NIYKLPADDV LRSYGLSKSI DAADDTIIAG TLLGSIFVFA PISREEYELL EAVQAKLVVH PLTAPVLGND HKEFRGRENP SQATKILDGD
1301: MLAQFLELTN RQQEVQKSLE KNIQSHRSCL CVLEGRILKH VPRSWDDSNS RLRFSAMFAE LTDRIVPVAV NCRFGFFQRP LRSWNGLYLI FLFMNLTLEY
1401: EITFLNQLPL EATCSSGNSP YDVANHVQRI LAETLGFECT QLGRKAKYNI LT
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.