Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08477 | Canola | nucleus | 96.17 | 96.1 |
| CDX73841 | Canola | nucleus, plastid | 82.19 | 83.3 |
| CDY00750 | Canola | nucleus | 79.84 | 81.03 |
| AT3G11960.3 | Thale cress | nucleus | 82.19 | 81.0 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 62.47 | 62.29 |
| KRH68075 | Soybean | nucleus, plastid | 58.35 | 57.17 |
| KRG96340 | Soybean | nucleus, plastid | 57.62 | 56.45 |
| Solyc10g080630.1.1 | Tomato | nucleus | 56.73 | 55.35 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 52.61 | 52.96 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 23.47 | 47.9 |
| KXG34639 | Sorghum | plastid | 47.68 | 47.61 |
| Zm00001d019115_P048 | Maize | plastid | 47.09 | 47.2 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 40.91 | 45.99 |
| TraesCS2D01G245600.6 | Wheat | plastid | 45.62 | 45.55 |
| TraesCS2A01G243300.3 | Wheat | plastid | 45.55 | 45.48 |
| HORVU2Hr1G055870.14 | Barley | plastid | 45.11 | 45.07 |
| Os07t0203800-01 | Rice | cytosol, plastid | 7.21 | 34.88 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 16.56 | 18.96 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 16.26 | 18.71 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 4.34 | 18.67 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 13.98 | 17.23 |
| CDX76416 | Canola | cytosol | 13.83 | 16.67 |
| CDY69930 | Canola | plastid | 5.74 | 16.63 |
| CDY54326 | Canola | cytosol | 2.8 | 16.59 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 6.25 | 15.89 |
| CDY69266 | Canola | nucleus | 6.33 | 15.69 |
| CDY70585 | Canola | plastid | 3.53 | 13.52 |
Protein Annotations
| Gene3D:2.130.10.10 | Gene3D:3.30.980.30 | MapMan:35.1 | GO:A0A078EK37 | EnsemblPlants:CDY01074 | ProteinID:CDY01074 |
| ProteinID:CDY01074.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00111119001 | InterPro:IPR015943 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF6 | UniParc:UPI0004EE1814 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g41260D
Coordinates
chrLK031923:+:1042014..1049654
Molecular Weight (calculated)
149126.0 Da
IEP (calculated)
5.232
GRAVY (calculated)
0.020
Length
1359 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAPEDESSA QSQSSSAAAA APTPPPPPSS AGDHYLAKCV IRPSVVLQVA YGYFRSRSSR GIVFGKETCI ELAVIGEDGV VESVCEQNVF GTIKDLAVIP
0101: QSNKPYSTSF QMGKDLLAVL SDSGKLSFLS FSNEMHRFSP IQHVQLSSPG NSRDQLGRML TSYYAICSGL FLAVSAYHHR FALFSLSTSS MADIILKRIF
0201: YPSEDGGKAS SEQAVSGTIW SMCFISKSFN ESMDYDPVLA IVLNRKGSLL NELVLFRWNV KEESVCLISE YVEAGALAHS IVEVPHSSGF AFLLRMGDAL
0301: LMDLRDPQNP CCLVRTSLDF VPASLVEEQF LEESCRVQDG DDEGLFNVAA CALLELRDYD PMFIDNESDN GKLSSKHVSS WTWEPEHNHN PRMIICLDDG
0401: EFFMFELIYE DDGVKVNVSE CLYKGLPCKE ILWVEGEFLA TFAEMADGTV FKVGTEKLHW MSSIQNIAPI LDFSVVDDQN EKRDQILACC GVTPEGSLRI
0501: IRSGINVEKL LKTAPVYQGI TGTWTVKMKL TDVYHSFLVL SFVEETRVLS VGLSFKDVTD SVGFQPDVCT LACGLVADGL LVQIHRDAIR LCIPTVDAHA
0601: DGIPVSSPFF SPWFPENVSI SLGAVGENLI VVSTSNPCFL SILGVKSVSS QCCEIYEIQR VTLQYEVSCI SIPQKYIGKK RHRASSLDNS CSKAAIPSGM
0701: ERGYTFLIGT HKPSVEVVSF SEEDGGGVRV LASGMVSLTN TMGTVISGCI PQDVRLVLVD QVYVLSGLRN GMLLRFEWPP FSHSSGHCKE EMDSVVSDLL
0801: LIATRRIGIT PVFLVPFSDS LDSDIIALSD RPWLLQTARQ SLSYTSISFQ PSTHATPVCS PECTQGILFV AENCLHLVEM VHSKRLNAQK FHLGGTPRKV
0901: IYHSESKLLI VMRTDLYDAC TSDICCVDPL SGSVLSSYKL KPGETGKSME LVRVGNEQVL VVGTSLSFGP AILPSGEAES TRGRLIILCL EHTHNSDSGS
1001: MTICSKAGSS SQRTSPFRDV VGCTTEQLSS SSLCSSPDDN SYDGIKIDES ETWHLRLACA TTWPGMVLAI CPYLDHFFLA SAGNAFYVCG FPNDSPERMK
1101: RFAVGRTRFM ITSLRTYFTR IVVGGCRDGV LFYSYHEDVK KLHQIYCDPA QRLVGDCFLM DANSVAVSDR KGSIAILSCK DHSDFEYSNP ESNLNLNCAY
1201: HMGEIAMAIK KGCNIYKLPA DDVLRSYGLS KSIDAADDTI IAGTLLGSIF VFAPISREEY ELLEAVQAKL VVHPLTAPVL GNDHKEFRGR ENPSQATKIL
1301: DGDMLAQFLE LTNRQQESVL STPQPSSSTL KSSSKQCSSP PLMLHQVVQL LERVHYALH
0101: QSNKPYSTSF QMGKDLLAVL SDSGKLSFLS FSNEMHRFSP IQHVQLSSPG NSRDQLGRML TSYYAICSGL FLAVSAYHHR FALFSLSTSS MADIILKRIF
0201: YPSEDGGKAS SEQAVSGTIW SMCFISKSFN ESMDYDPVLA IVLNRKGSLL NELVLFRWNV KEESVCLISE YVEAGALAHS IVEVPHSSGF AFLLRMGDAL
0301: LMDLRDPQNP CCLVRTSLDF VPASLVEEQF LEESCRVQDG DDEGLFNVAA CALLELRDYD PMFIDNESDN GKLSSKHVSS WTWEPEHNHN PRMIICLDDG
0401: EFFMFELIYE DDGVKVNVSE CLYKGLPCKE ILWVEGEFLA TFAEMADGTV FKVGTEKLHW MSSIQNIAPI LDFSVVDDQN EKRDQILACC GVTPEGSLRI
0501: IRSGINVEKL LKTAPVYQGI TGTWTVKMKL TDVYHSFLVL SFVEETRVLS VGLSFKDVTD SVGFQPDVCT LACGLVADGL LVQIHRDAIR LCIPTVDAHA
0601: DGIPVSSPFF SPWFPENVSI SLGAVGENLI VVSTSNPCFL SILGVKSVSS QCCEIYEIQR VTLQYEVSCI SIPQKYIGKK RHRASSLDNS CSKAAIPSGM
0701: ERGYTFLIGT HKPSVEVVSF SEEDGGGVRV LASGMVSLTN TMGTVISGCI PQDVRLVLVD QVYVLSGLRN GMLLRFEWPP FSHSSGHCKE EMDSVVSDLL
0801: LIATRRIGIT PVFLVPFSDS LDSDIIALSD RPWLLQTARQ SLSYTSISFQ PSTHATPVCS PECTQGILFV AENCLHLVEM VHSKRLNAQK FHLGGTPRKV
0901: IYHSESKLLI VMRTDLYDAC TSDICCVDPL SGSVLSSYKL KPGETGKSME LVRVGNEQVL VVGTSLSFGP AILPSGEAES TRGRLIILCL EHTHNSDSGS
1001: MTICSKAGSS SQRTSPFRDV VGCTTEQLSS SSLCSSPDDN SYDGIKIDES ETWHLRLACA TTWPGMVLAI CPYLDHFFLA SAGNAFYVCG FPNDSPERMK
1101: RFAVGRTRFM ITSLRTYFTR IVVGGCRDGV LFYSYHEDVK KLHQIYCDPA QRLVGDCFLM DANSVAVSDR KGSIAILSCK DHSDFEYSNP ESNLNLNCAY
1201: HMGEIAMAIK KGCNIYKLPA DDVLRSYGLS KSIDAADDTI IAGTLLGSIF VFAPISREEY ELLEAVQAKL VVHPLTAPVL GNDHKEFRGR ENPSQATKIL
1301: DGDMLAQFLE LTNRQQESVL STPQPSSSTL KSSSKQCSSP PLMLHQVVQL LERVHYALH
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.