Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73841 | Canola | nucleus, plastid | 87.75 | 87.62 |
| CDY01074 | Canola | nucleus | 81.03 | 79.84 |
| CDY08477 | Canola | nucleus | 80.13 | 78.9 |
| AT3G11960.3 | Thale cress | nucleus | 75.58 | 73.39 |
| VIT_08s0007g07150.t01 | Wine grape | cytosol, nucleus, plasma membrane | 61.84 | 60.75 |
| KRH68075 | Soybean | nucleus, plastid | 57.06 | 55.08 |
| Solyc10g080630.1.1 | Tomato | nucleus | 56.61 | 54.41 |
| KRG96340 | Soybean | nucleus, plastid | 55.94 | 54.0 |
| GSMUA_Achr9P11080_001 | Banana | nucleus, plasma membrane, plastid | 52.8 | 52.37 |
| Os07t0203700-01 | Rice | cytosol, nucleus | 23.23 | 46.7 |
| Zm00001d019115_P048 | Maize | plastid | 47.27 | 46.68 |
| KXG34639 | Sorghum | plastid | 47.42 | 46.66 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 40.25 | 44.58 |
| TraesCS2A01G243300.3 | Wheat | plastid | 45.03 | 44.31 |
| TraesCS2D01G245600.6 | Wheat | plastid | 45.03 | 44.31 |
| HORVU2Hr1G055870.14 | Barley | plastid | 44.51 | 43.82 |
| Os07t0203800-01 | Rice | cytosol, plastid | 7.32 | 34.88 |
| CDY36309 | Canola | cytosol, nucleus, plastid | 17.33 | 19.64 |
| CDY36325 | Canola | nucleus, plastid, vacuole | 17.4 | 19.63 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 4.41 | 18.67 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 14.79 | 17.95 |
| CDY69930 | Canola | plastid | 6.12 | 17.48 |
| CDX76416 | Canola | cytosol | 14.64 | 17.38 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 6.87 | 17.2 |
| CDY69266 | Canola | nucleus | 6.95 | 16.97 |
| CDY54326 | Canola | cytosol | 2.84 | 16.59 |
| CDY70585 | Canola | plastid | 3.96 | 14.93 |
Protein Annotations
| EnsemblPlants:CDY00750 | EnsemblPlantsGene:GSBRNA2T00110626001 | GO:A0A078EF77 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C | PANTHER:PTHR10644 |
| PANTHER:PTHR10644:SF6 | PFAM:PF03178 | PFAM:PF10433 | ProteinID:CDY00750 | ProteinID:CDY00750.1 | SEG:seg |
| UniParc:UPI0004EEA9EA | MapMan:35.1 | : | : | : | : |
Description
BnaC03g37340D
Coordinates
chrLK031921:+:961262..968288
Molecular Weight (calculated)
146748.0 Da
IEP (calculated)
5.161
GRAVY (calculated)
0.003
Length
1339 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAPEDESSA QSQSSSAATA APTPPPPPSA GDHYLAKCVL PPSVVLQVAY GYFRSPSSRD VVFGKETCLE LVVIGEDGIV ESVCEQNAFG TIKDLAVIPR
0101: SKMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSSP GNSRTQLGRM LTVDSRQVFS CRGLFLAVSA YHDRFALFSL STSSMADIIH ERIFYPSEDG
0201: GKTSSVEELS GTIWSMCFIS KGFNESKSYD PVLAIVFNRK GSLLNELVLF RWNIKEESIC LISEYVEAGP LAHSIVEVPH SSGFAFLLRI GDALLMDLRD
0301: PQNPCCLVRT SLDLVPPSSL VEEHFVEESC RVQDGDDEGL SNVAASALLK LSDWDPMFID NESEIGKLSS KHVSSWTWEP DHNYNPRMII CLDDGEFFVF
0401: GLVYDDDGVK INISECLYKG LPCKEILWVE GGFLATFAEM ADGTVFKLGK EKLHWMSSIQ NIAPILDFSV VDDQNEKRDQ MFACCGVTPE GSLRIIRSGV
0501: NVEKLLKTAP VYQGITGTWT VKMKLPDVYH SFLVLSFVEE TRVLSVGLSF KDVTDSVGFQ PDVCTLACGL VADGLLVQIH QDAVRLCMAN MDGSSPFVSS
0601: WFPENVSISL GAVAENLIVV STSNPCFLSV LGVRSVSSHC CEIYEIQRVE LQYEVSCISI PQKSIGKKRC KAAIPSGMER GYTFLIGTHK PSVEVLSFSE
0701: DDGGGLRVLA SGMVSLTNTM GTAIRGCIPQ DVRLVLVDQI YVLSGLRNGM LLRFEWPSFS HPSGLNKEEM DIVVGERENL PINLVLIATR RIGITPVFLV
0801: PFSDSLDSDI IALSDRPWLL HTARQSLSYT SISFQASTHA TPVCSSECPQ GILFVAENSL HLVEMVHSKR LNAQKFHLGG TPRKVIYHSE SKLLIVMRTD
0901: LCDAGTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEQVLVVGTS LSSGPAILPS GEAESTKGRI LILCLAHTQN SDSGSMIICS KDGSTSQRTS
1001: PFRDEQLSSS SLCSSPDDNS YDDDIKLDEA EAWHLKLAAA TTWPGMVLAI CPYLDRFFLA SAGNAFYVCG FPNDRPDKMK RFAVGRTRFM ITSLRTYLTR
1101: IVVGDCRDGV LFYSYHEDVK KLHQVYCDPA QRLVADCFLM DANSVAVSDR KGSIAILSCK DHSDFEYSNP ESNLNLNCAY HMGEVAMAIK KGGNIYKLPA
1201: DDVLRSYGLS KSTEAADDTI IAGTLLGSIF VFAPISREEY ELLEAVQAKL VVHPLTAPVL GNDHKEFRGR ESPSQATKIL DGDMLAQFLE LTNRQQESVL
1301: STPQPSPSSL KASSKQCPSP PLMLHQVVQL LERVHYALH
0101: SKMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSSP GNSRTQLGRM LTVDSRQVFS CRGLFLAVSA YHDRFALFSL STSSMADIIH ERIFYPSEDG
0201: GKTSSVEELS GTIWSMCFIS KGFNESKSYD PVLAIVFNRK GSLLNELVLF RWNIKEESIC LISEYVEAGP LAHSIVEVPH SSGFAFLLRI GDALLMDLRD
0301: PQNPCCLVRT SLDLVPPSSL VEEHFVEESC RVQDGDDEGL SNVAASALLK LSDWDPMFID NESEIGKLSS KHVSSWTWEP DHNYNPRMII CLDDGEFFVF
0401: GLVYDDDGVK INISECLYKG LPCKEILWVE GGFLATFAEM ADGTVFKLGK EKLHWMSSIQ NIAPILDFSV VDDQNEKRDQ MFACCGVTPE GSLRIIRSGV
0501: NVEKLLKTAP VYQGITGTWT VKMKLPDVYH SFLVLSFVEE TRVLSVGLSF KDVTDSVGFQ PDVCTLACGL VADGLLVQIH QDAVRLCMAN MDGSSPFVSS
0601: WFPENVSISL GAVAENLIVV STSNPCFLSV LGVRSVSSHC CEIYEIQRVE LQYEVSCISI PQKSIGKKRC KAAIPSGMER GYTFLIGTHK PSVEVLSFSE
0701: DDGGGLRVLA SGMVSLTNTM GTAIRGCIPQ DVRLVLVDQI YVLSGLRNGM LLRFEWPSFS HPSGLNKEEM DIVVGERENL PINLVLIATR RIGITPVFLV
0801: PFSDSLDSDI IALSDRPWLL HTARQSLSYT SISFQASTHA TPVCSSECPQ GILFVAENSL HLVEMVHSKR LNAQKFHLGG TPRKVIYHSE SKLLIVMRTD
0901: LCDAGTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEQVLVVGTS LSSGPAILPS GEAESTKGRI LILCLAHTQN SDSGSMIICS KDGSTSQRTS
1001: PFRDEQLSSS SLCSSPDDNS YDDDIKLDEA EAWHLKLAAA TTWPGMVLAI CPYLDRFFLA SAGNAFYVCG FPNDRPDKMK RFAVGRTRFM ITSLRTYLTR
1101: IVVGDCRDGV LFYSYHEDVK KLHQVYCDPA QRLVADCFLM DANSVAVSDR KGSIAILSCK DHSDFEYSNP ESNLNLNCAY HMGEVAMAIK KGGNIYKLPA
1201: DDVLRSYGLS KSTEAADDTI IAGTLLGSIF VFAPISREEY ELLEAVQAKL VVHPLTAPVL GNDHKEFRGR ESPSQATKIL DGDMLAQFLE LTNRQQESVL
1301: STPQPSPSSL KASSKQCPSP PLMLHQVVQL LERVHYALH
0001: MAAPEDESSA QSQSSPATAA PTPPPSSSPS SAGDHYLAKC ILRPSVVLQV AYGYFRSPSS RDIVFGKETC IELVVIGEDG IVESVCEQYV FGTIKDLAVI
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
0101: PQSSKLYSNS LQMGKDLLAV LSDSGKLSFL SFSNEMHRFS PIQHVQLSTP GNSRIQLGRM LTIDSSGLFL AVSAYHDRFA LFSLSTSSMG DIIHQRISYP
0201: SEDGGNGSSI QAISGTIWSM CFISKDFNES KEYAPILAIV INRKGSLMNE LALFRWNVKE ESICLISEYV ETGALAHSIV EVPHSSGFAF LFRIGDVLLM
0301: DLRDPQNPCC LFRTSLDFVP ASLMEEHFVE ESCRVQDGDD EGCNVVVCAL LELRDHEVRD HDPMFIDTES DIGKLSSKNV SSWTWEPENN HNPRMIICLD
0401: NGDFFMFELI YEDDGVKVNL SECLYKGLPC KDILWIEGGF LATFAEMADG TVFKLGTEKL HWMSSIQNIA PILDFSVMDD QNEKRDQIFA CCGVTPEGSL
0501: RIIRSGINVE KLLKTAPVYQ GITGTWTVKM KLTDVYHSFL VLSFVEETRV LSVGLSFKDV TDSVGFQSDV CTFACGLVAD GLLVQIHQDA IRLCMPTMDA
0601: HSDGIPVSSP FFSSWFPENV SISLGAVGQN LIVVSTSNPC FLSILGVKSV SSQCCEIYEI QRVTLQYEVS CISVPQKHIG KKRSRDSSPD NFCKAAIPSA
0701: MEQGYTFLIG THKPSVEVLS FTEDGVGVRV LASGLVSLTN TMGTVISGCI PQDVRLVLVD QLYVLSGLRN GMLLRFEWAP FSNSSGLNCP DYFSHCKEEM
0801: DTVVGKKDNL PVNLLLIATR RIGITPVFLV PFSDSLDSDI IALSDRPWLL QTARQSLSYT SISFQPSTHA TPVCSFECPQ GILFVSENCL HLVEMVHSKR
0901: RNAQKFQLGG TPRKVIYHSE SKLLIVMRTD LYDTCTSDIC CVDPLSGSVL SSYKLKPGET GKSMELVRVG NEHVLVVGTS LSSGPAILPS GEAESTKGRV
1001: IILCLEHTQN SDSGSMTICS KACSSSQRTS PFHDVVGYTT ENLSSSSLCS SPDDYSYDGI KLDEAETWQL RLASSTTWPG MVLAICPYLD HYFLASAGNA
1101: FYVCGFPNDS PERMKRFAVG RTRFMITSLR TYFTRIVVGD CRDGVLFYSY HEESKKLHQI YCDPAQRLVA DCFLMDANSV AVSDRKGSIA ILSCKDHSDF
1201: GMKHLEYSSP ESNLNLNCAY YMGEIAMSIK KGCNIYKLPA DDVLRSYGLS KSIDTADDTI IAGTLLGSIF VFAPISSEEY ELLEGVQAKL GIHPLTAPVL
1301: GNDHNEFRGR ENPSQARKIL DGDMLAQFLE LTNRQQESVL STPQPSPSTS KASSKQRSFP PLMLHQVVQL LERVHYALH
Arabidopsis Description
Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:UniProtKB/TrEMBL;Acc:Q84R20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.