Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g03710.t01 | |
| VIT_10s0003g04360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31160.1 | VIT_10s0003g04360.t01 | AT4G05420.1 | 18552200 |
| AT4G31160.1 | VIT_10s0003g03710.t01 | AT5G46210.1 | 18552200 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0691200-00 | Rice | cytosol | 22.97 | 12.48 |
| KRH16085 | Soybean | cytosol | 25.58 | 12.29 |
| VIT_04s0008g03060.t01 | Wine grape | cytosol, nucleus, plasma membrane | 62.5 | 10.93 |
| GSMUA_Achr7P23160_001 | Banana | plasma membrane, plastid, vacuole | 39.24 | 7.89 |
| Solyc08g074370.2.1 | Tomato | nucleus | 42.15 | 7.71 |
| TraesCS2B01G630100.1 | Wheat | nucleus | 33.72 | 7.63 |
| KRH52554 | Soybean | nucleus | 40.99 | 7.33 |
| KRH61892 | Soybean | cytosol | 40.99 | 7.26 |
| CDX72295 | Canola | cytosol, nucleus, plastid | 36.63 | 7.19 |
| Bra024021.1-P | Field mustard | nucleus | 36.92 | 7.06 |
| AT4G31160.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.37 | 7.01 |
| Bra010248.1-P | Field mustard | nucleus | 37.5 | 6.77 |
| CDY13413 | Canola | nucleus | 34.01 | 6.69 |
| CDY23283 | Canola | nucleus | 35.47 | 6.61 |
| CDY36454 | Canola | nucleus | 34.88 | 6.53 |
| HORVU2Hr1G126010.3 | Barley | cytosol | 33.72 | 6.27 |
| TraesCS2A01G566600.1 | Wheat | nucleus | 34.01 | 6.15 |
| TraesCS2D01G576800.1 | Wheat | cytosol | 34.01 | 6.15 |
| Zm00001d026691_P004 | Maize | cytosol | 33.43 | 6.01 |
| EES13157 | Sorghum | cytosol | 32.85 | 5.9 |
| Zm00001d002933_P014 | Maize | cytosol | 32.27 | 5.84 |
| GSMUA_Achr3P22370_001 | Banana | cytosol | 26.45 | 5.48 |
| CDY03208 | Canola | nucleus | 0.87 | 1.55 |
Protein Annotations
| ArrayExpress:VIT_15s0021g02350 | EMBL:FN594952 | EnsemblPlants:VIT_15s0021g02350.t01 | EnsemblPlantsGene:VIT_15s0021g02350 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | PANTHER:PTHR13129 | ProteinID:CCB43853 |
| ProteinID:CCB43853.1 | SEG:seg | UniParc:UPI0002109CE6 | UniProt:F6GV71 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr15:-:13342406..13345625
Molecular Weight (calculated)
38275.3 Da
IEP (calculated)
10.319
GRAVY (calculated)
-0.595
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MARELEKLRA ELANADKGAS AAAPGGNPDA GNYFFNLLSS IKYSKIPPPV LRSRQGRKLK MKLSKEQMRI VVIDWHDFVM RTAVPVDVRG GSPKSPQTNH
101: WKRTDGACKY TSSYRCCYPY LEAHRAALAA ATPITYHSRE LLLVIHEHLQ ASGSSTTTAQ LLKEAQLTPL PSLAASSSLV HQASSQETPS MQLQWPSGRI
201: AGGFLSNKWK PNTKDEDSCL KFDSPVSSSK KKPLVFSATF SFQFRNQPQS HDAQTPAISK VFSTSKRSSV PANVPETPSM TASKPNLDAE SRYKTPIIWT
301: REFGNVHGGI HGNRRDRQFI YSRFRPWSIC RDDGNGRETT QYVC
101: WKRTDGACKY TSSYRCCYPY LEAHRAALAA ATPITYHSRE LLLVIHEHLQ ASGSSTTTAQ LLKEAQLTPL PSLAASSSLV HQASSQETPS MQLQWPSGRI
201: AGGFLSNKWK PNTKDEDSCL KFDSPVSSSK KKPLVFSATF SFQFRNQPQS HDAQTPAISK VFSTSKRSSV PANVPETPSM TASKPNLDAE SRYKTPIIWT
301: REFGNVHGGI HGNRRDRQFI YSRFRPWSIC RDDGNGRETT QYVC
0001: MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
0101: HNSGKLCILI RENDEFFELI SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA KKEASDFEML KTYSTGLLAL
0201: SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
0301: SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC
0401: IIGTKNITDL VKRAVGAAET EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN PTCVTSDQTT DVSEVSLPDI
0501: ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
0601: SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE
0701: KQMAFHTCFA LRQYFRAHLL LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW PAVNNFLASS GHVTMLELCQ
0801: TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
0901: PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR
1001: DDTIAQILTK LEVGKSLSEL IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA ATPITYDSKE LLLLIHEHLQ
1101: ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201: PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP
1301: ISFPRKRKLS ELRDSSVPGK RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL DSLVVQYLKH QHRQCLAPIT
1401: TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501: LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN
1601: PYSLVHFSPC DTLILWNGVL WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV
1701: HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801: GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD DGEMQDFMSS GEEDDYRDNI RSS
Arabidopsis Description
DCAF1DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M086]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.