Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P07200_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28450.1 | GSMUA_Achr8P07200_001 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 82.3 | 82.3 |
| EES02165 | Sorghum | nucleus | 82.3 | 82.3 |
| EER93077 | Sorghum | nucleus | 81.64 | 81.64 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 81.42 | 81.42 |
| Os01t0238900-01 | Rice | cytosol, nucleus | 49.56 | 80.87 |
| TraesCS3A01G160900.1 | Wheat | nucleus | 79.87 | 79.87 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 79.87 | 79.87 |
| TraesCS3B01G191500.1 | Wheat | nucleus | 79.42 | 79.42 |
| KRH73094 | Soybean | nucleus | 76.55 | 76.55 |
| PGSC0003DMT400024304 | Potato | nucleus | 75.89 | 75.89 |
| Solyc07g053660.2.1 | Tomato | nucleus | 75.89 | 75.89 |
| KRH15046 | Soybean | nucleus | 74.34 | 75.68 |
| AT4G28450.1 | Thale cress | nucleus | 75.0 | 75.0 |
| CDX92872 | Canola | nucleus | 73.01 | 72.85 |
| Bra024202.1-P | Field mustard | nucleus | 72.79 | 72.79 |
| CDY29906 | Canola | nucleus | 72.79 | 72.63 |
| VIT_03s0017g01870.t01 | Wine grape | cytosol | 7.96 | 69.23 |
Protein Annotations
| MapMan:17.1.3.2.1.8 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0080008 | EnsemblPlantsGene:GSMUA_Achr8G16000_001 |
| EnsemblPlants:GSMUA_Achr8P16000_001 | EnsemblPlants:GSMUA_Achr8T16000_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0TQV3 |
| PFAM:PF00400 | PFAM:PF04158 | PFAM:PF08662 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22851 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sof1 | InterPro:TIF_beta_prop-like |
| UniParc:UPI0002966C7C | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
Putative DDB1- and CUL4-associated factor 13 [Source:GMGC_GENE;Acc:GSMUA_Achr8G16000_001]
Coordinates
chr8:+:13809282..13819366
Molecular Weight (calculated)
52225.4 Da
IEP (calculated)
9.588
GRAVY (calculated)
-0.660
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVKVISRST EEFTRERSQD LQKVFRNYDP KLRTHEKAVE YTRALNAAKL EKIFARPFIG AMDGHIDAVS CMAKNPNHLK GIFSGSMDGD IRLWDIATRK
101: TVCQFPGHQG AVRGLTSSTD GEMLISCGTD CTVRLWKVPL LKMMDSRESD EDYSKPLAVY VWKHAFWAVD HQWDGPLFAT AGSQVDIWDH NRSEPINTFE
201: WGKDTVISVR FNPGEPDVIA TSASDRSITL YDLRMSSPVR KLIMRTKTNA ICWNPMEPMN FTAANEDCSC YSYDTRKLDE AKVVHKDHVS AVMDIDYSPT
301: GREFVTGSYD RTVRIFPYNG DHSREIYHTK RMQRVFCVRY SCDGSYLISG SDDTNLRLWK AKSSEQMGVL LPRERKKQEY LDAVKERYKH LPEVKRIVRH
401: RHLPKPIYKA AALRRTMIEA ENKRDQKRRA HSAPGSMPVQ PFRKRRIIKE DE
101: TVCQFPGHQG AVRGLTSSTD GEMLISCGTD CTVRLWKVPL LKMMDSRESD EDYSKPLAVY VWKHAFWAVD HQWDGPLFAT AGSQVDIWDH NRSEPINTFE
201: WGKDTVISVR FNPGEPDVIA TSASDRSITL YDLRMSSPVR KLIMRTKTNA ICWNPMEPMN FTAANEDCSC YSYDTRKLDE AKVVHKDHVS AVMDIDYSPT
301: GREFVTGSYD RTVRIFPYNG DHSREIYHTK RMQRVFCVRY SCDGSYLISG SDDTNLRLWK AKSSEQMGVL LPRERKKQEY LDAVKERYKH LPEVKRIVRH
401: RHLPKPIYKA AALRRTMIEA ENKRDQKRRA HSAPGSMPVQ PFRKRRIIKE DE
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Arabidopsis Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.