Factsheet for VIT_14s0030g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0182g00070.t01	Wine grape	plastid	86.9	94.31
Solyc05g013030.1.1	Tomato	plastid	80.35	87.0
PGSC0003DMT400072856	Potato	plastid	80.13	86.76
VIT_12s0034g00940.t01	Wine grape	extracellular	18.34	73.04
VIT_15s0048g00130.t01	Wine grape	cytosol	4.8	57.89
VIT_08s0040g00430.t01	Wine grape	cytosol	18.78	19.55

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100260524	wikigene:100260524	MapMan:19.2.6.2.2.5	EMBL:AM466989	ProteinID:CAN63723
ProteinID:CAN63723.1	ProteinID:CCB58101	ProteinID:CCB58101.1	ncoils:Coil	UniProt:F6HTU0	EMBL:FN596249
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248	InterPro:IPR000717	InterPro:IPR011990
EntrezGene:LOC100260524	wikigene:LOC100260524	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	TIGR:TC52755
TIGR:TC56183	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109959	ArrayExpress:VIT_14s0030g01670	EnsemblPlantsGene:VIT_14s0030g01670	EnsemblPlants:VIT_14s0030g01670.t01
unigene:Vvi.5114	InterPro:WH_DNA-bd_sf	RefSeq:XP_002276988	RefSeq:XP_002276988.1	RefSeq:XP_002277010	RefSeq:XP_002277010.1
RefSeq:XP_003633654	RefSeq:XP_003633654.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:6493941..6497660

Molecular Weight (calculated)

51213.4 Da

IEP (calculated)

7.937

GRAVY (calculated)

0.000

Length

458 amino acids

Sequence
(BLAST)

001: MHHLIHFSHF CPKPILPIIA YKKSQLTGFA FFKSVTMTSS YLPATTESIA QALEAKTPSE AISILYRVID NPSSSSESLR IKEQAITNLS DLLRQESRAE
101: ELRSLLTQLR PFFSLIPKAK TAKIVRGIID AVAKIPNTSD LQISLCKEMV AWTRAEKRTF LRQRVEARLA ALLMESKEYS EALTLLSGLI KEVRRLDDKL
201: LLVDIDLLES KLHFSLRNLP KAKAALTAAR TAANAIYVPP AQQGTIDLQS GILHAEEKDY KTAYSYFFEA FEAFNALEEP RAVFSLKYML LCKIMVSQAD
301: DVAGIISSKA GLQYVGPELD AMKAVADAHA KRSLKLFETA LRNYKAQLEE DPIVHRHLSS LYDTLLEQNL CRLIEPFSRV EIAHIAELIE LPVDHVEKKL
401: SQMILDKKFA GTLDQGAGCL IIFEDPKTDA IYPATLETIS NIGKVVDSLY VRSAKIMA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.