Factsheet for TraesCS6B01G246600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G055460.11	Barley	nucleus, plastid	97.5	97.5
TraesCS6A01G216300.2	Wheat	nucleus	95.39	96.32
TraesCS6D01G199300.3	Wheat	plastid	93.09	79.77
EES05393	Sorghum	nucleus	79.27	78.97
Zm00001d017150_P001	Maize	nucleus	77.54	77.25
Os02t0606100-00	Rice	nucleus, plasma membrane	13.82	62.61
GSMUA_Achr6P28750_001	Banana	nucleus	61.23	61.23
KRH71216	Soybean	nucleus	60.08	60.42
KRH50214	Soybean	nucleus	59.5	59.96
AT1G73180.1	Thale cress	cytosol	57.39	58.28
CDX68240	Canola	nucleus	55.85	56.73
Bra003854.1-P	Field mustard	nucleus	55.66	56.53
VIT_05s0094g00460.t01	Wine grape	nucleus	59.5	53.73
Solyc08g014060.2.1	Tomato	plastid	58.16	52.15
CDY11124	Canola	mitochondrion	55.28	50.79
TraesCS4B01G083200.1	Wheat	cytosol	16.51	12.2
TraesCS5B01G446600.1	Wheat	cytosol	16.51	11.93
TraesCS6B01G307400.1	Wheat	cytosol	15.74	11.92

Protein Annotations

MapMan:17.4.3.1	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR015943	PFAM:PF08662
PIRSF:PIRSF017222	PANTHER:PTHR13227	SUPFAM:SSF82171	InterPro:TIF2A	InterPro:TIF_beta_prop-like	EnsemblPlantsGene:TraesCS6B01G246600
EnsemblPlants:TraesCS6B01G246600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:+:439061398..439067417

Molecular Weight (calculated)

57087.6 Da

IEP (calculated)

9.728

GRAVY (calculated)

-0.431

Length

521 amino acids

Sequence
(BLAST)

001: MASQQPSLAI LVREPDGFTV WPGPPYPPGS SPPQRLPKTA CSATSFSRDG SRLLATVASA SATVYDCSSL SVIRSFDLPG LTAAALSPTG SYLQTFQKSS
101: SPQVKNVTVW HVDTATALYQ HYQKNLSKAN WPMVQFSADE SVACRMATNE MQFFDTNDFT KGIVYKVRLP GIAAMQLASA PGSHVAGFVP EAKGVPASVQ
201: IFSCDKDAQN QVVARRSFFR CSTVQFHWNK GSTGLLIVSQ ADVDKTNQSY YGETKLHYLT TDRAFEGIVP LKKEGPVHDV QWSSSGSEFA VVYGFMPAKA
301: TIFNKKCNPL HELGEGPYNT IRWNPKGRFI VIAGFGNLPG DMAFWDYSEK KLIQKAKAEW SVISEWSPDG RHFMTATTAP RLQIDNRIKI FDHTGSLQFI
401: KEFEKLYQVD WKPESPERFG DIAELTISLN GIKIEETKKQ VSGQGSKSAQ TSGKAPVNVA TKPAGAYRPP QSKHTAALQD KLFGGLAPTG GEMSKTALRN
501: KKRREKQKEK KAGEGSSADD S

Best Arabidopsis Sequence Match ( AT1G73180.1 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAELLGIST TGEMSKNALK NKKKRENKKA
501: AAAAAAASGS NNA

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.