CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97478	Canola	nucleus	93.1	71.05
CDY14220	Canola	nucleus	60.92	42.74
CDY39982	Canola	cytosol	36.78	18.08
CDX87307	Canola	cytosol	37.93	17.55

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078H9W8	UniProt:A0A078H9W8	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlants:CDY35250	ProteinID:CDY35250	ProteinID:CDY35250.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00058167001	InterPro:IPR000270	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF18	SUPFAM:SSF54277	UniParc:UPI0004EE3611

Description

BnaA01g07810DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9W8]

Coordinates

chrLK032348:-:338668..339634

Molecular Weight (calculated)

9847.9 Da

IEP (calculated)

7.084

GRAVY (calculated)

-0.285

Length

87 amino acids

Sequence
(BLAST)

1: MFSCFTIGQF GSHGGCGRDG LNESRLTDLL RGSEYVVTYE DKDSDWMLVG DVPWEMFICS CKKLRIMKSS EAIGLAPRVM EKCRSRN

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.