Factsheet for Solyc11g039840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041105	Potato	mitochondrion	100.0	100.0
CDY09795	Canola	cytosol	48.3	94.81
CDX69642	Canola	mitochondrion	72.45	79.01
GSMUA_Achr3P19600_001	Banana	cytosol	66.79	78.67
VIT_01s0150g00160.t01	Wine grape	mitochondrion	79.25	77.21
KXG30298	Sorghum	mitochondrion	76.23	74.26
AT5G13430.1	Thale cress	mitochondrion	76.23	74.26
Bra006199.1-P	Field mustard	mitochondrion	76.6	74.09
CDX78521	Canola	mitochondrion	75.47	74.07
Zm00001d025286_P001	Maize	mitochondrion	76.23	73.99
GSMUA_Achr5P21560_001	Banana	mitochondrion	76.98	73.91
Zm00001d016619_P001	Maize	mitochondrion	75.85	73.9
KRH70065	Soybean	nucleus	73.58	73.58
Os02t0520800-01	Rice	mitochondrion	75.47	73.53
EES10690	Sorghum	mitochondrion	74.72	73.33
KRH70066	Soybean	mitochondrion	73.58	73.31
KRH08411	Soybean	mitochondrion	72.83	73.11
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	75.09	72.89
TraesCS2A01G288200.1	Wheat	mitochondrion	75.09	72.89
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	75.09	72.89
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	75.09	72.89
TraesCS6A01G202900.1	Wheat	mitochondrion	72.45	72.73
CDX70503	Canola	mitochondrion	75.47	72.73
CDX70502	Canola	mitochondrion	74.72	72.53
Bra008830.1-P	Field mustard	mitochondrion	74.34	72.43
GSMUA_AchrUn_...	Banana	mitochondrion	75.09	72.36
CDY09798	Canola	mitochondrion	73.96	72.32
CDX91122	Canola	mitochondrion	73.96	72.32
CDX85651	Canola	mitochondrion	74.72	72.26
CDY16491	Canola	mitochondrion	73.96	72.06
Os04t0398500-01	Rice	mitochondrion	75.47	71.94
TraesCS6B01G229200.1	Wheat	mitochondrion	73.21	71.85
TraesCS6D01G187400.1	Wheat	mitochondrion	73.21	71.85
AT5G13440.1	Thale cress	mitochondrion	73.96	71.53
Bra023411.1-P	Field mustard	mitochondrion	73.96	71.53
CDX85650	Canola	mitochondrion	73.96	71.53
CDX78520	Canola	mitochondrion	74.34	71.38
Bra023412.1-P	Field mustard	mitochondrion	73.58	71.17
Bra006198.1-P	Field mustard	mitochondrion	72.83	69.68
TraesCS7B01G151800.1	Wheat	mitochondrion	69.06	67.28
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	69.06	66.55
CDX91123	Canola	cytosol	75.47	45.66

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600	InterPro:IPR017941	InterPro:IPR036922
UniProt:K4D7W0	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM
SUPFAM:SSF50022	SUPFAM:SSF81502	EnsemblPlantsGene:Solyc11g039840.1	EnsemblPlants:Solyc11g039840.1.1	TIGRFAMs:TIGR01416	TMHMM:TMhelix
UniParc:UPI00005CA271	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:

Description

Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4D7W0]

Coordinates

chr11:-:41904667..41907629

Molecular Weight (calculated)

28868.3 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.131

Length

265 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SSAARSSSSF FTRSSFTVTD DSSPARSPSP SLTSSFLDQI RGFSSNSVSP AHQLGLVSDL PATVAAIKNP SSKIVYDDSN HERYPPGDPS
101: KRAFAYFVLT GGRFVYASLL RLLILKFVLS MSASKDVLAL ASLEVDLSSI EPGSTVTVKW RGKPVFIRRR TDDDIKLANS VDLGTLRDPQ QDAERVKNPE
201: WLVVVGVCTH LGCIPLPNAG DFGGWFCPCH GSHYDISGRI RKGPAPYNLE VPTYSFLEEN KLLIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.