Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 7
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
20408568
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010048_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13430.1 | Zm00001d010048_P004 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09795 | Canola | cytosol | 45.42 | 91.85 |
| EES10690 | Sorghum | mitochondrion | 89.38 | 90.37 |
| Os04t0398500-01 | Rice | mitochondrion | 89.01 | 87.41 |
| Zm00001d016619_P001 | Maize | mitochondrion | 84.25 | 84.56 |
| TraesCS2B01G305000.1 | Wheat | golgi, mitochondrion, unclear | 83.15 | 83.15 |
| HORVU2Hr1G071350.1 | Barley | mitochondrion, plasma membrane | 82.78 | 82.78 |
| TraesCS2A01G288200.1 | Wheat | mitochondrion | 82.78 | 82.78 |
| TraesCS2D01G286500.1 | Wheat | golgi, mitochondrion | 82.78 | 82.78 |
| GSMUA_Achr3P19600_001 | Banana | cytosol | 65.57 | 79.56 |
| CDX69642 | Canola | mitochondrion | 68.13 | 76.54 |
| Solyc11g039840.1.1 | Tomato | plastid | 73.99 | 76.23 |
| PGSC0003DMT400041105 | Potato | mitochondrion | 73.99 | 76.23 |
| TraesCS7B01G151800.1 | Wheat | mitochondrion | 75.82 | 76.1 |
| GSMUA_Achr5P21560_001 | Banana | mitochondrion | 75.46 | 74.64 |
| KRH08411 | Soybean | mitochondrion | 71.79 | 74.24 |
| KRH70065 | Soybean | nucleus | 71.43 | 73.58 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 73.99 | 73.45 |
| KRH70066 | Soybean | mitochondrion | 71.43 | 73.31 |
| AT5G13430.1 | Thale cress | mitochondrion | 72.16 | 72.43 |
| CDX70502 | Canola | mitochondrion | 71.43 | 71.43 |
| CDX70503 | Canola | mitochondrion | 71.79 | 71.27 |
| CDX91122 | Canola | mitochondrion | 70.7 | 71.22 |
| CDX85651 | Canola | mitochondrion | 71.43 | 71.17 |
| CDX85650 | Canola | mitochondrion | 71.43 | 71.17 |
| VIT_14s0068g01030.t01 | Wine grape | mitochondrion | 71.43 | 71.17 |
| Bra006199.1-P | Field mustard | mitochondrion | 71.43 | 71.17 |
| CDX78521 | Canola | mitochondrion | 70.33 | 71.11 |
| AT5G13440.1 | Thale cress | mitochondrion | 71.06 | 70.8 |
| Bra023412.1-P | Field mustard | mitochondrion | 71.06 | 70.8 |
| CDX78520 | Canola | mitochondrion | 71.06 | 70.29 |
| CDY09798 | Canola | mitochondrion | 69.6 | 70.11 |
| Bra023411.1-P | Field mustard | mitochondrion | 70.33 | 70.07 |
| CDY16491 | Canola | mitochondrion | 69.23 | 69.49 |
| Bra008830.1-P | Field mustard | mitochondrion | 69.23 | 69.49 |
| Bra006198.1-P | Field mustard | mitochondrion | 69.6 | 68.59 |
| CDX91123 | Canola | cytosol | 71.79 | 44.75 |
Protein Annotations
| KEGG:00190+1.10.2.2 | Gene3D:2.102.10.10 | MapMan:2.4.3.4 | ProteinID:AQK43456.1 | UniProt:B4FC14 | EMBL:BT034652 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006091 | GO:GO:0006810 |
| GO:GO:0006950 | GO:GO:0008121 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009060 | GO:GO:0009408 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0016679 |
| GO:GO:0016874 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0051536 | GO:GO:0051537 | GO:GO:0055114 |
| GO:GO:0070469 | GO:GO:1902600 | InterPro:IPR017941 | InterPro:IPR036922 | PFAM:PF00355 | PFAM:PF02921 |
| PRINTS:PR00162 | PFscan:PS51296 | PANTHER:PTHR10134 | PANTHER:PTHR10134:SF17 | InterPro:Rieske_2Fe-2S | InterPro:Rieske_2Fe-2S_sf |
| InterPro:Rieske_Fe-S_prot | InterPro:Rieske_Fe-S_prot_C | InterPro:Rieske_TM | SUPFAM:SSF50022 | SUPFAM:SSF81502 | TIGRFAMs:TIGR01416 |
| UniParc:UPI00017B6472 | InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su | EnsemblPlantsGene:Zm00001d025286 | EnsemblPlants:Zm00001d025286_P001 | EnsemblPlants:Zm00001d025286_T001 | SEG:seg |
Description
iron-sulfur protein1 iron-sulfur protein1
Coordinates
chr10:+:112660019..112662739
Molecular Weight (calculated)
29845.6 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.163
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRVAGRRLS SSLSWRPAAA VARGPLAGAG VPDRDDDSAR GRSHPRFSID SPFFVASRGF SSTETVVPRN QDAGLADLPA TVAAVKNPNP KVVYDEYNHE
101: RYPPGDPSKR AFAYFVLSGG RFIYASLLRL LVLKFVLSMS ASKDVLALAS LEVDLSSIEP GTTVTVKWRG KPVFIRRRTE DDIKLANSVD VASLRHPEQD
201: AERVKNPEWL VVIGVCTHLG CIPLPNAGDF GGWFCPCHGS HYDISGRIRK GPAPFNLEVP TYSFLEENKL LVG
101: RYPPGDPSKR AFAYFVLSGG RFIYASLLRL LVLKFVLSMS ASKDVLALAS LEVDLSSIEP GTTVTVKWRG KPVFIRRRTE DDIKLANSVD VASLRHPEQD
201: AERVKNPEWL VVIGVCTHLG CIPLPNAGDF GGWFCPCHGS HYDISGRIRK GPAPFNLEVP TYSFLEENKL LVG
001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG
Arabidopsis Description
UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.