Factsheet for VIT_14s0068g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	43.07	87.41
GSMUA_Achr3P19600_001	Banana	cytosol	66.79	81.33
KRH08411	Soybean	mitochondrion	74.45	77.27
KRH70065	Soybean	nucleus	73.36	75.85
CDX69642	Canola	mitochondrion	66.79	75.31
KRH70066	Soybean	mitochondrion	72.99	75.19
VIT_01s0150g00160.t01	Wine grape	mitochondrion	72.99	73.53
EES10690	Sorghum	mitochondrion	71.9	72.96
Zm00001d025286_P001	Maize	mitochondrion	71.17	71.43
KXG30298	Sorghum	mitochondrion	70.8	71.32
Zm00001d016619_P001	Maize	mitochondrion	70.44	70.96
Os02t0520800-01	Rice	mitochondrion	70.44	70.96
GSMUA_AchrUn_...	Banana	mitochondrion	71.17	70.91
TraesCS6A01G202900.1	Wheat	mitochondrion	68.25	70.83
TraesCS6D01G187400.1	Wheat	mitochondrion	69.71	70.74
TraesCS6B01G229200.1	Wheat	mitochondrion	69.71	70.74
GSMUA_Achr5P21560_001	Banana	mitochondrion	70.8	70.29
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	69.34	69.6
TraesCS2A01G288200.1	Wheat	mitochondrion	69.34	69.6
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	69.34	69.6
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	69.34	69.6
Os04t0398500-01	Rice	mitochondrion	70.07	69.06
CDY09798	Canola	mitochondrion	68.25	69.0
CDX91122	Canola	mitochondrion	68.25	69.0
AT5G13440.1	Thale cress	mitochondrion	68.61	68.61
CDX70503	Canola	mitochondrion	68.61	68.36
CDX70502	Canola	mitochondrion	67.88	68.13
Bra008830.1-P	Field mustard	mitochondrion	67.52	68.01
AT5G13430.1	Thale cress	mitochondrion	67.52	68.01
CDY16491	Canola	mitochondrion	67.52	68.01
Bra006199.1-P	Field mustard	mitochondrion	67.88	67.88
Bra023411.1-P	Field mustard	mitochondrion	67.88	67.88
CDX85651	Canola	mitochondrion	67.88	67.88
CDX85650	Canola	mitochondrion	67.88	67.88
CDX78521	Canola	mitochondrion	66.79	67.78
Bra023412.1-P	Field mustard	mitochondrion	67.52	67.52
CDX78520	Canola	mitochondrion	67.88	67.39
Bra006198.1-P	Field mustard	mitochondrion	66.79	66.06
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	64.96	64.73
TraesCS7B01G151800.1	Wheat	mitochondrion	63.5	63.97
CDX91123	Canola	cytosol	67.88	42.47

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:100256570	wikigene:100256570	Gene3D:2.102.10.10	MapMan:2.4.3.4	ProteinID:CCB46968
ProteinID:CCB46968.1	UniProt:F6H425	EMBL:FN595232	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600	InterPro:IPR017941	InterPro:IPR036922
EntrezGene:LOC100256570	wikigene:LOC100256570	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296
PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C
InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGR:TC59729	TIGR:TC61251	TIGRFAMs:TIGR01416
TMHMM:TMhelix	UniParc:UPI00015C88C5	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	ArrayExpress:VIT_14s0068g01030	EnsemblPlantsGene:VIT_14s0068g01030	EnsemblPlants:VIT_14s0068g01030.t01
unigene:Vvi.1612	RefSeq:XP_002276466	RefSeq:XP_002276466.1	SEG:seg	:	:

Description

Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6H425]

Coordinates

chr14:-:24792515..24797207

Molecular Weight (calculated)

30235.0 Da

IEP (calculated)

8.607

GRAVY (calculated)

-0.245

Length

274 amino acids

Sequence
(BLAST)

001: MLRVASRRLS SLTSSSSLWR PNQVASAVVT SNPINPDEQP KPTRFSDSFS FASQFHLPFR GFASESLTPR NESGVIPDAP PTVAAVKNPT PKIVYDEHNH
101: ERYPPGDPSK RAFAYFVLTG GRFVYASLIR LLILKFVLSM SASKDVLAMA SVEVDLSGIE SGNTVTIKWR GKPVFIRRRT EEDIKSANSV DLASLRDPQE
201: DSERVKNPEW LIVVGVCTHL GCIPLPNAGD FGGWFCPCHG SHYDVSGRIR KGPAPYNLEV PTYSFLDENK LLVG

Best Arabidopsis Sequence Match ( AT5G13440.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG

Arabidopsis Description

UCR1-2Cytochrome b-c1 complex subunit Rieske-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.