Factsheet for HORVU6Hr1G051210.7

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
TargetP:	secretory
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT5G13430.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT5G13430.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	45.82	93.33
TraesCS6D01G187400.1	Wheat	mitochondrion	76.73	78.15
TraesCS6B01G229200.1	Wheat	mitochondrion	76.73	78.15
TraesCS6A01G202900.1	Wheat	mitochondrion	74.91	78.03
GSMUA_Achr3P19600_001	Banana	cytosol	63.27	77.33
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	73.45	73.99
Zm00001d016619_P001	Maize	mitochondrion	73.09	73.9
CDX69642	Canola	mitochondrion	65.09	73.66
KXG30298	Sorghum	mitochondrion	72.73	73.53
Os02t0520800-01	Rice	mitochondrion	72.0	72.79
CDX78521	Canola	mitochondrion	68.0	69.26
Solyc11g039840.1.1	Tomato	plastid	66.55	69.06
PGSC0003DMT400041105	Potato	mitochondrion	66.55	69.06
KRH08411	Soybean	mitochondrion	66.18	68.94
Bra006199.1-P	Field mustard	mitochondrion	68.0	68.25
CDY09798	Canola	mitochondrion	66.91	67.9
CDX70502	Canola	mitochondrion	67.27	67.77
AT5G13430.1	Thale cress	mitochondrion	66.91	67.65
KRH70065	Soybean	nucleus	65.09	67.55
CDX91122	Canola	mitochondrion	66.55	67.53
GSMUA_Achr5P21560_001	Banana	mitochondrion	67.64	67.39
KRH70066	Soybean	mitochondrion	65.09	67.29
CDX85650	Canola	mitochondrion	66.91	67.15
CDX78520	Canola	mitochondrion	67.27	67.03
CDY16491	Canola	mitochondrion	66.18	66.91
Bra008830.1-P	Field mustard	mitochondrion	66.18	66.91
GSMUA_AchrUn_...	Banana	mitochondrion	66.91	66.91
CDX70503	Canola	mitochondrion	66.91	66.91
CDX85651	Canola	mitochondrion	66.55	66.79
Bra023412.1-P	Field mustard	mitochondrion	66.55	66.79
Bra023411.1-P	Field mustard	mitochondrion	65.82	66.06
AT5G13440.1	Thale cress	mitochondrion	65.82	66.06
Bra006198.1-P	Field mustard	mitochondrion	66.18	65.7
VIT_14s0068g01030.t01	Wine grape	mitochondrion	64.73	64.96
CDX91123	Canola	cytosol	66.55	41.78

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	UniProt:A0A287U5I1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	EnsemblPlantsGene:HORVU6Hr1G051210	EnsemblPlants:HORVU6Hr1G051210.7	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM
SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	TMHMM:TMhelix	UniParc:UPI000B47D93D	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su
SEG:seg	:	:	:	:	:

Description

Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A287U5I1]

Coordinates

chrchr6H:+:311590847..311591902

Molecular Weight (calculated)

30386.9 Da

IEP (calculated)

7.970

GRAVY (calculated)

0.254

Length

275 amino acids

Sequence
(BLAST)

001: NIIFLLISAT LVVWVGLVLP CAALYYYNIN LGRDNNATAV AMLVSCFFWY FTYLIYLLSC AGFSAESLVP RSQDVGLAEL PATAAALKNP CAKIVYDEYN
101: HKRYPPGDPS KRAFAYFVLS GGRFVYASLL RLLVLKFVLS MSASKDVLAL ASLEVDLSSI EPGTTVTVKW RGKPVFIRRR TEDDVKLANS VDVASLRDPQ
201: EDAVRVKNPE WLVVIGVCTH LGCIPLPNSG DFGGWFCPCH GSHYDISGRI RKGPAPYNLE VPTYSFLEDN KMLIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.