Factsheet for PGSC0003DMT400041105

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g039840.1.1	Tomato	plastid	100.0	100.0
CDY09795	Canola	cytosol	48.3	94.81
CDX69642	Canola	mitochondrion	72.45	79.01
GSMUA_Achr3P19600_001	Banana	cytosol	66.79	78.67
VIT_01s0150g00160.t01	Wine grape	mitochondrion	79.25	77.21
KXG30298	Sorghum	mitochondrion	76.23	74.26
AT5G13430.1	Thale cress	mitochondrion	76.23	74.26
Bra006199.1-P	Field mustard	mitochondrion	76.6	74.09
CDX78521	Canola	mitochondrion	75.47	74.07
Zm00001d025286_P001	Maize	mitochondrion	76.23	73.99
GSMUA_Achr5P21560_001	Banana	mitochondrion	76.98	73.91
Zm00001d016619_P001	Maize	mitochondrion	75.85	73.9
KRH70065	Soybean	nucleus	73.58	73.58
Os02t0520800-01	Rice	mitochondrion	75.47	73.53
EES10690	Sorghum	mitochondrion	74.72	73.33
KRH70066	Soybean	mitochondrion	73.58	73.31
KRH08411	Soybean	mitochondrion	72.83	73.11
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	75.09	72.89
TraesCS2A01G288200.1	Wheat	mitochondrion	75.09	72.89
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	75.09	72.89
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	75.09	72.89
TraesCS6A01G202900.1	Wheat	mitochondrion	72.45	72.73
CDX70503	Canola	mitochondrion	75.47	72.73
CDX70502	Canola	mitochondrion	74.72	72.53
Bra008830.1-P	Field mustard	mitochondrion	74.34	72.43
GSMUA_AchrUn_...	Banana	mitochondrion	75.09	72.36
CDY09798	Canola	mitochondrion	73.96	72.32
CDX91122	Canola	mitochondrion	73.96	72.32
CDX85651	Canola	mitochondrion	74.72	72.26
CDY16491	Canola	mitochondrion	73.96	72.06
Os04t0398500-01	Rice	mitochondrion	75.47	71.94
TraesCS6B01G229200.1	Wheat	mitochondrion	73.21	71.85
TraesCS6D01G187400.1	Wheat	mitochondrion	73.21	71.85
AT5G13440.1	Thale cress	mitochondrion	73.96	71.53
Bra023411.1-P	Field mustard	mitochondrion	73.96	71.53
CDX85650	Canola	mitochondrion	73.96	71.53
CDX78520	Canola	mitochondrion	74.34	71.38
Bra023412.1-P	Field mustard	mitochondrion	73.58	71.17
Bra006198.1-P	Field mustard	mitochondrion	72.83	69.68
TraesCS7B01G151800.1	Wheat	mitochondrion	69.06	67.28
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	69.06	66.55
CDX91123	Canola	cytosol	75.47	45.66

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:102591978	Gene3D:2.102.10.10	MapMan:2.4.3.4	ProteinID:ABA81878	ProteinID:ABA81878.1
ProteinID:CAA55894	ProteinID:CAA55894.1	EMBL:DQ207870	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600
InterPro:IPR017941	InterPro:IPR036922	RefSeq:NP_001275627.1	PFAM:PF00355	PFAM:PF02921	EnsemblPlantsGene:PGSC0003DMG400015910
PGSC:PGSC0003DMG400015910	EnsemblPlants:PGSC0003DMT400041105	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17
UniProt:Q38M54	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM
SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	TMHMM:TMhelix	UniParc:UPI00005CA271	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su
EMBL:X79332	SEG:seg	:	:	:	:

Description

Ubiquinol-cytochrome c reductase iron-sulfur subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400015910]

Coordinates

chr11:+:20026699..20030240

Molecular Weight (calculated)

28868.3 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.131

Length

265 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SSAARSSSSF FTRSSFTVTD DSSPARSPSP SLTSSFLDQI RGFSSNSVSP AHQLGLVSDL PATVAAIKNP SSKIVYDDSN HERYPPGDPS
101: KRAFAYFVLT GGRFVYASLL RLLILKFVLS MSASKDVLAL ASLEVDLSSI EPGSTVTVKW RGKPVFIRRR TDDDIKLANS VDLGTLRDPQ QDAERVKNPE
201: WLVVVGVCTH LGCIPLPNAG DFGGWFCPCH GSHYDISGRI RKGPAPYNLE VPTYSFLEEN KLLIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.