Factsheet for HORVU2Hr1G071350.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT5G13430.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT5G13430.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	99.27	99.27
TraesCS2A01G288200.1	Wheat	mitochondrion	99.27	99.27
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	99.27	99.27
TraesCS7B01G151800.1	Wheat	mitochondrion	90.11	90.44
CDY09795	Canola	cytosol	44.32	89.63
EES10690	Sorghum	mitochondrion	87.55	88.52
Zm00001d025286_P001	Maize	mitochondrion	82.78	82.78
Os04t0398500-01	Rice	mitochondrion	82.78	81.3
GSMUA_Achr3P19600_001	Banana	cytosol	63.37	76.89
CDX69642	Canola	mitochondrion	67.4	75.72
Solyc11g039840.1.1	Tomato	plastid	72.89	75.09
PGSC0003DMT400041105	Potato	mitochondrion	72.89	75.09
GSMUA_AchrUn_...	Banana	mitochondrion	74.36	73.82
GSMUA_Achr5P21560_001	Banana	mitochondrion	74.36	73.55
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	73.99	73.45
KRH08411	Soybean	mitochondrion	69.96	72.35
AT5G13430.1	Thale cress	mitochondrion	70.7	70.96
KRH70065	Soybean	nucleus	68.86	70.94
CDX70502	Canola	mitochondrion	70.7	70.7
KRH70066	Soybean	mitochondrion	68.86	70.68
CDX85651	Canola	mitochondrion	70.7	70.44
CDX91122	Canola	mitochondrion	69.6	70.11
Bra006199.1-P	Field mustard	mitochondrion	69.96	69.71
Bra023411.1-P	Field mustard	mitochondrion	69.96	69.71
CDX78521	Canola	mitochondrion	68.86	69.63
CDX70503	Canola	mitochondrion	69.96	69.45
CDY09798	Canola	mitochondrion	68.86	69.37
VIT_14s0068g01030.t01	Wine grape	mitochondrion	69.6	69.34
CDX85650	Canola	mitochondrion	69.6	69.34
CDX78520	Canola	mitochondrion	69.96	69.2
CDY16491	Canola	mitochondrion	68.86	69.12
Bra008830.1-P	Field mustard	mitochondrion	68.86	69.12
Bra023412.1-P	Field mustard	mitochondrion	69.23	68.98
AT5G13440.1	Thale cress	mitochondrion	69.23	68.98
Bra006198.1-P	Field mustard	mitochondrion	69.23	68.23
CDX91123	Canola	cytosol	70.7	44.06

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	EMBL:AK366283	EMBL:AK369245	UniProt:F2DQW5
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006810
GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600
EnsemblPlantsGene:HORVU2Hr1G071350	EnsemblPlants:HORVU2Hr1G071350.1	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355	PFAM:PF02921
PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416
UniParc:UPI0002006CDE	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:

Description

Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F2DQW5]

Coordinates

chrchr2H:+:509053603..509056014

Molecular Weight (calculated)

29810.6 Da

IEP (calculated)

9.103

GRAVY (calculated)

-0.186

Length

273 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SSLSWRPAAT VGARGPLAGA GGPGRDDDDG SAYQRRFAIE SPFFTAARGF SSAETLVPRN QDAGLVELPA TVAALKNPNS KILYDQYNHE
101: RYPPGDPSKR AFAYFVLSGG RFVYASLLRL LVLKFVLSMS ASKDVLALAS LEVDLSSIEP GSTVTVKWRG KPVFIRRRTD DDIKLANSVD VASLRHPEQD
201: AERVKNPEWL VVIGVCTHLG CIPLPNSGDF GGWFCPCHGS HYDISGRIRK GPAPYNLEVP TYSFLEDNKM LIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.