Factsheet for Os04t0398500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	45.32	93.33
Zm00001d025286_P001	Maize	mitochondrion	87.41	89.01
EES10690	Sorghum	mitochondrion	84.53	87.04
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	81.65	83.15
TraesCS2A01G288200.1	Wheat	mitochondrion	81.3	82.78
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	81.3	82.78
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	81.3	82.78
Os02t0520800-01	Rice	mitochondrion	80.22	81.99
GSMUA_Achr3P19600_001	Banana	cytosol	62.95	77.78
CDX69642	Canola	mitochondrion	67.27	76.95
TraesCS7B01G151800.1	Wheat	mitochondrion	74.46	76.1
Solyc11g039840.1.1	Tomato	plastid	71.94	75.47
PGSC0003DMT400041105	Potato	mitochondrion	71.94	75.47
KRH08411	Soybean	mitochondrion	70.5	74.24
GSMUA_Achr5P21560_001	Banana	mitochondrion	73.02	73.55
GSMUA_AchrUn_...	Banana	mitochondrion	72.66	73.45
AT5G13430.1	Thale cress	mitochondrion	71.22	72.79
KRH70065	Soybean	nucleus	69.06	72.45
KRH70066	Soybean	mitochondrion	69.06	72.18
CDX91122	Canola	mitochondrion	69.78	71.59
Bra006199.1-P	Field mustard	mitochondrion	70.5	71.53
CDX70502	Canola	mitochondrion	70.14	71.43
CDX78521	Canola	mitochondrion	69.06	71.11
CDX70503	Canola	mitochondrion	70.14	70.91
CDX85651	Canola	mitochondrion	69.78	70.8
CDY09798	Canola	mitochondrion	68.7	70.48
AT5G13440.1	Thale cress	mitochondrion	69.42	70.44
CDX85650	Canola	mitochondrion	69.42	70.44
CDX78520	Canola	mitochondrion	69.78	70.29
Bra023412.1-P	Field mustard	mitochondrion	69.06	70.07
Bra023411.1-P	Field mustard	mitochondrion	69.06	70.07
VIT_14s0068g01030.t01	Wine grape	mitochondrion	69.06	70.07
CDY16491	Canola	mitochondrion	68.35	69.85
Bra008830.1-P	Field mustard	mitochondrion	68.35	69.85
Bra006198.1-P	Field mustard	mitochondrion	68.35	68.59
CDX91123	Canola	cytosol	70.14	44.52

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	EntrezGene:4335710	EMBL:AK059519	ProteinID:BAF14586.1
ProteinID:BAS89023.1	ProteinID:CAE05156.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006091	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114
GO:GO:0070469	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlantsGene:Os04g0398500	EnsemblPlants:Os04t0398500-01	PFAM:PF00355
PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	UniProt:Q7XLG4
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022
SUPFAM:SSF81502	TIGRFAMs:TIGR01416	TMHMM:TMhelix	UniParc:UPI00001B1B5A	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	RefSeq:XP_015636761.1
SEG:seg	:	:	:	:	:

Description

Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP). (Os04t0398500-01)

Coordinates

chr4:+:19685272..19687980

Molecular Weight (calculated)

30096.8 Da

IEP (calculated)

8.900

GRAVY (calculated)

-0.195

Length

278 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SSLSWRPAAT AAAAAGGPRG GPLAGKNDDD DNNGNGRVQP RFSIESPFFA AARGFSSSET LVPRNQDTGL AELPATVAAL KNPNPKVVYD
101: EYNHERHAPG DPSKRAFAYF VLSGGRFIYA SLLRLLVLKF VLSMSASKDV LALASLEVDL SSIEPGTTVT VKWRGKPVFI RRRTEDDIAL ANSVDVGSLR
201: HPQQDAERVK NPEWLVVIGV CTHLGCIPLP NAGDFGGWFC PCHGSHYDIS GRIRKGPAPF NLEVPTYSFL EENKLLIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.