CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	CDX70151	AT5G05410.1	18552202
AT5G13430.1	CDX98843	AT5G05410.1	18552202
AT5G13430.1	CDY04950	AT5G05410.1	18552202
AT5G13430.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09795	Canola	cytosol	49.45	100.0
CDX78520	Canola	mitochondrion	98.53	97.46
CDX85651	Canola	mitochondrion	95.24	94.89
CDX69642	Canola	mitochondrion	83.88	94.24
AT5G13440.1	Thale cress	mitochondrion	92.67	92.34
AT5G13430.1	Thale cress	mitochondrion	91.21	91.54
CDX70503	Canola	mitochondrion	91.94	91.27
CDX85650	Canola	mitochondrion	90.11	89.78
CDY16491	Canola	mitochondrion	89.38	89.71
CDX91122	Canola	mitochondrion	89.01	89.67
CDY09798	Canola	mitochondrion	89.01	89.67
CDX78521	Canola	mitochondrion	87.91	88.89
GSMUA_Achr3P19600_001	Banana	cytosol	62.64	76.0
Solyc11g039840.1.1	Tomato	plastid	72.53	74.72
PGSC0003DMT400041105	Potato	mitochondrion	72.53	74.72
EES10690	Sorghum	mitochondrion	72.16	72.96
VIT_01s0150g00160.t01	Wine grape	mitochondrion	72.16	72.43
Os02t0520800-01	Rice	mitochondrion	72.16	72.43
KRH08411	Soybean	mitochondrion	69.96	72.35
KRH70066	Soybean	mitochondrion	70.33	72.18
KRH70065	Soybean	nucleus	69.96	72.08
Zm00001d016619_P001	Maize	mitochondrion	71.43	71.69
TraesCS6A01G202900.1	Wheat	mitochondrion	69.23	71.59
Zm00001d025286_P001	Maize	mitochondrion	71.43	71.43
TraesCS6D01G187400.1	Wheat	mitochondrion	70.33	71.11
TraesCS6B01G229200.1	Wheat	mitochondrion	69.96	70.74
TraesCS2A01G288200.1	Wheat	mitochondrion	70.7	70.7
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	70.7	70.7
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	70.7	70.7
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	70.7	70.7
Os04t0398500-01	Rice	mitochondrion	71.43	70.14
KXG30298	Sorghum	mitochondrion	69.6	69.85
GSMUA_Achr5P21560_001	Banana	mitochondrion	70.33	69.57
GSMUA_AchrUn_...	Banana	mitochondrion	69.96	69.45
VIT_14s0068g01030.t01	Wine grape	mitochondrion	68.13	67.88
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	67.77	67.27
TraesCS7B01G151800.1	Wheat	mitochondrion	64.47	64.71
CDX91123	Canola	cytosol	95.24	59.36

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:A0A078C164	EnsemblPlants:CDX70502	ProteinID:CDX70502
ProteinID:CDX70502.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0016679
GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00140331001	InterPro:IPR017941	InterPro:IPR036922	PFAM:PF00355
PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17	MetaCyc:PWY-3781
MetaCyc:PWY-6692	MetaCyc:PWY-7082	MetaCyc:PWY-7279	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot
InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	UniParc:UPI0004EF4714
InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:	:

Description

BnaC03g05860D

Coordinates

chrLK031791:-:767514..769228

Molecular Weight (calculated)

29743.3 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.199

Length

273 amino acids

Sequence
(BLAST)

001: MLRVAGRRLF SVSQRSTNAT SFALSRDHTL SDGGGDSSSS ATRSVPSPDL SRFGSYHLVR GFSSQVLTQG NEVGFGSEPA TVEAVKTPNS KIVYDDHNHE
101: RYPPGDPSKR AFAYFVLSGG RFVYASVLRL LVLKLIVSMS ASKDVLALAS LEVDLGSIEP GTTVTVKWRG KPVFIRRRTE DDIKLANSVD LGSLRDPQED
201: AVRVKNPEWL VVVGVCTHLG CIPLPNAGDY GGWFCPCHGS HYDISGRIRK GPAPYNLEVP TYSFLEENKL LIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.