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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:mitochondrion, nucleus, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400016846 Potato plastid 91.53 89.5
Solyc10g011770.2.1 Tomato plastid 41.24 43.2
Solyc01g095430.2.1 Tomato plastid 40.68 42.35
EES15027 Sorghum mitochondrion 32.2 36.31
Zm00001d032232_P007 Maize mitochondrion 31.64 35.44
Solyc06g066620.2.1 Tomato plastid 24.86 29.93
Solyc10g005050.2.1 Tomato plastid 26.55 26.11
Solyc11g010480.1.1 Tomato plastid 29.38 10.0
Protein Annotations
EnsemblPlants:Solyc03g007830.2.1EnsemblPlantsGene:Solyc03g007830.2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0009579
GO:GO:0016020GO:GO:0016021InterPro:CAAD_domInterPro:CURT1ncoils:CoilPANTHER:PTHR33222
PANTHER:PTHR33222:SF4PFAM:PF14159SEG:segTMHMM:TMhelixUniParc:UPI0002768326UniProt:K4BEK5
MapMan:35.1:::::
Description
Protein CURVATURE THYLAKOID 1A, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G01150) UniProtKB/Swiss-Prot;Acc:O04616]
Coordinates
chr3:-:2380349..2382848
Molecular Weight (calculated)
19942.0 Da
IEP (calculated)
10.131
GRAVY (calculated)
-0.225
Length
177 amino acids
Sequence
(BLAST)
001: MATASSSSME RIRSLPHSSM TMRLCHSNVP SLLRLSPQAA RSSFSSSFRS PTGFRRCIGS KRSPIFKIRA SFSEEETSEP ADRIRKVFSN VKDTWDGLEK
101: KPTIFLYGGS AILGLWFSSI IADALDSIPL LPKFLELVGL GYFGWFVYRY LLFKSGRDEL RSDIQALKKK ITGDEEE
Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)
001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE
Arabidopsis Description
CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.