Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G202200.1 | Wheat | mitochondrion, peroxisome | 98.55 | 98.55 |
| TraesCS7B01G109100.1 | Wheat | mitochondrion, peroxisome | 97.1 | 97.1 |
| Os06t0253100-01 | Rice | mitochondrion | 87.68 | 82.88 |
| HORVU0Hr1G020420.1 | Barley | plastid | 96.38 | 77.78 |
| EER89539 | Sorghum | mitochondrion | 78.99 | 73.65 |
| Zm00001d044728_P001 | Maize | mitochondrion | 77.54 | 73.29 |
| GSMUA_Achr9P27260_001 | Banana | peroxisome | 58.7 | 55.86 |
| PGSC0003DMT400060736 | Potato | mitochondrion | 52.9 | 50.34 |
| Solyc04g014480.2.1 | Tomato | mitochondrion | 52.9 | 50.34 |
| AT5G37670.1 | Thale cress | cytosol | 47.83 | 48.18 |
| KRH72979 | Soybean | cytosol, mitochondrion, peroxisome | 50.0 | 47.92 |
| Bra028141.1-P | Field mustard | cytosol | 47.1 | 46.76 |
| CDY01718 | Canola | cytosol | 47.1 | 46.76 |
| CDY60723 | Canola | cytosol | 47.1 | 46.76 |
| KRH17351 | Soybean | mitochondrion | 48.55 | 46.53 |
| VIT_13s0019g00860.t01 | Wine grape | cytosol | 46.38 | 45.07 |
| TraesCS3D01G045500.1 | Wheat | cytosol | 42.03 | 38.41 |
| TraesCS3D01G046700.1 | Wheat | cytosol | 42.03 | 38.41 |
| TraesCS3D01G046800.1 | Wheat | cytosol | 42.03 | 38.41 |
| TraesCS3D01G045600.1 | Wheat | cytosol | 41.3 | 37.75 |
| TraesCS3D01G045700.1 | Wheat | cytosol | 41.3 | 37.75 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 42.75 | 37.58 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 42.75 | 37.58 |
| TraesCS3D01G045800.1 | Wheat | cytosol | 41.3 | 37.5 |
| TraesCS4D01G212500.1 | Wheat | cytosol | 41.3 | 36.77 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 42.75 | 36.65 |
| TraesCS3D01G046600.1 | Wheat | cytosol | 39.86 | 36.42 |
| TraesCS3D01G046300.1 | Wheat | cytosol | 39.86 | 36.42 |
| TraesCS4D01G212300.1 | Wheat | cytosol | 41.3 | 36.31 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 41.3 | 36.08 |
| TraesCS7D01G185600.1 | Wheat | cytosol | 32.61 | 32.61 |
| TraesCS7D01G185500.1 | Wheat | cytosol | 36.96 | 31.88 |
| TraesCS3D01G044400.1 | Wheat | cytosol | 35.51 | 31.61 |
| TraesCS4D01G086200.1 | Wheat | endoplasmic reticulum | 37.68 | 25.62 |
| TraesCS2D01G311400.1 | Wheat | endoplasmic reticulum, golgi | 32.61 | 20.55 |
Protein Annotations
| MapMan:19.1.8.10 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | GO:GO:0000302 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005782 | GO:GO:0006457 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009987 | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF142 |
| SUPFAM:SSF49764 | EnsemblPlantsGene:TraesCS7D01G205400 | EnsemblPlants:TraesCS7D01G205400.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7D:-:163011724..163012324
Molecular Weight (calculated)
15078.1 Da
IEP (calculated)
9.096
GRAVY (calculated)
-0.304
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLFFGGSP FRRLLYARPF ASATAAMDWV ETPTSHVLRI NVPGLGKDDV KVQVEDGNVL SVRGAAKEKG KEGNEEEAVW HVAERGKPEF AREVALPEHV
101: RVEQIRASVD NGVLTVVVPK EPAPARPRTR PIAVSSKL
101: RVEQIRASVD NGVLTVVVPK EPAPARPRTR PIAVSSKL
001: MADRGIFLYP FRRFQEWSRS TALIDWMESN NSHIFKINVP GYNKEDIKVQ IEEGNVLSIR GEGIKEEKKE NLVWHVAERE AFSGGGSEFL RRIELPENVK
101: VDQVKAYVEN GVLTVVVPKD TSSKSSKVRN VNITSKL
101: VDQVKAYVEN GVLTVVVPKD TSSKSSKVRN VNITSKL
Arabidopsis Description
HSP15.715.7 kDa heat shock protein, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHQ3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.