CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
peroxisome 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	peroxisome
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21099
CDY21100
CDY21916
CDY22079
CDY50165
CDY50167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37670.1	CDY21916	AT1G03130.1	21798944
AT5G37670.1	CDY22079	AT1G03130.1	21798944
AT5G37670.1	CDY21099	AT1G13520.1	21798944
AT5G37670.1	CDY21100	AT1G13520.1	21798944
AT5G37670.1	CDY50165	AT1G13520.1	21798944
AT5G37670.1	CDY50167	AT1G13520.1	21798944
AT5G37670.1	CDY21916	AT4G02770.1	21798944
AT5G37670.1	CDY22079	AT4G02770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028141.1-P	Field mustard	cytosol	97.84	97.84
CDY60723	Canola	cytosol	97.84	97.84
AT5G37670.1	Thale cress	cytosol	83.45	84.67
KRH17351	Soybean	mitochondrion	69.78	67.36
KRH72979	Soybean	cytosol, mitochondrion, peroxisome	67.63	65.28
PGSC0003DMT400060736	Potato	mitochondrion	66.91	64.14
Solyc04g014480.2.1	Tomato	mitochondrion	66.19	63.45
VIT_13s0019g00860.t01	Wine grape	cytosol	60.43	59.15
GSMUA_Achr9P27260_001	Banana	peroxisome	49.64	47.59
TraesCS7D01G205400.1	Wheat	nucleus	46.76	47.1
TraesCS7B01G109100.1	Wheat	mitochondrion, peroxisome	46.76	47.1
TraesCS7A01G202200.1	Wheat	mitochondrion, peroxisome	46.76	47.1
EER89539	Sorghum	mitochondrion	48.92	45.95
Zm00001d044728_P001	Maize	mitochondrion	46.76	44.52
Os06t0253100-01	Rice	mitochondrion	46.76	44.52
CDY51363	Canola	cytosol	43.88	40.13
CDX97881	Canola	cytosol	43.88	39.87
HORVU0Hr1G020420.1	Barley	plastid	48.2	39.18
CDY60563	Canola	cytosol	42.45	38.82
CDY45448	Canola	cytosol	42.45	37.82
CDY56096	Canola	cytosol	41.01	37.5
CDY53371	Canola	cytosol	41.73	37.18
CDX99119	Canola	cytosol	41.73	36.94
CDX88719	Canola	cytosol	42.45	36.88
CDY53372	Canola	cytosol, plastid	41.01	36.77
CDY45447	Canola	cytosol	41.73	36.48
CDX86069	Canola	cytosol	41.01	36.31
CDX71079	Canola	cytosol	41.73	36.25
CDY49575	Canola	plastid	41.01	35.62
CDX93767	Canola	endoplasmic reticulum, extracellular, golgi	34.53	27.91
CDX86006	Canola	extracellular	33.09	26.74
CDX90748	Canola	extracellular	34.53	24.37
CDY05088	Canola	cytosol	33.81	23.86
CDY68135	Canola	cytosol	23.02	20.65

Protein Annotations

EnsemblPlants:CDY01718	EnsemblPlantsGene:GSBRNA2T00112811001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF142	PFAM:PF00011	PFscan:PS01031
ProteinID:CDY01718	ProteinID:CDY01718.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EDB0A8	MapMan:19.1.8.10

Description

BnaC04g30340D

Coordinates

chrLK031928:-:786177..787730

Molecular Weight (calculated)

15933.1 Da

IEP (calculated)

8.873

GRAVY (calculated)

-0.594

Length

139 amino acids

Sequence
(BLAST)

001: MADGIFWYPL RRFREWSGGS TALIDWMESP NAHIFKVNVP GYNKEDIKVQ IEEGNVLSIK GEGLKKEEKE KKEDLVWHVA EREAFSSKGE FLRRIELPEN
101: VKTDQIKAYV DNGLLTVVVP KDTSPKSSKV RNINITSKL

Best Arabidopsis Sequence Match ( AT5G37670.1 )
(BLAST)

001: MADRGIFLYP FRRFQEWSRS TALIDWMESN NSHIFKINVP GYNKEDIKVQ IEEGNVLSIR GEGIKEEKKE NLVWHVAERE AFSGGGSEFL RRIELPENVK
101: VDQVKAYVEN GVLTVVVPKD TSSKSSKVRN VNITSKL

Arabidopsis Description

HSP15.715.7 kDa heat shock protein, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.