CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 4
peroxisome 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93246
EES01631
EES09009
EES09201
EES16322
OQU78227
OQU80420

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37670.1	EER93246	AT1G03130.1	21798944
AT5G37670.1	EES09009	AT1G13520.1	21798944
AT5G37670.1	OQU80420	AT1G13520.1	21798944
AT5G37670.1	EES01631	AT2G41090.1	17360592
AT5G37670.1	EES09201	AT2G41090.1	17360592
AT5G37670.1	EES16322	AT2G41090.1	17360592
AT5G37670.1	OQU78227	AT2G41090.1	17360592
AT5G37670.1	EER93246	AT4G02770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044728_P001	Maize	mitochondrion	88.51	89.73
TraesCS7D01G205400.1	Wheat	nucleus	73.65	78.99
TraesCS7A01G202200.1	Wheat	mitochondrion, peroxisome	72.97	78.26
TraesCS7B01G109100.1	Wheat	mitochondrion, peroxisome	72.3	77.54
Os06t0253100-01	Rice	mitochondrion	71.62	72.6
HORVU0Hr1G020420.1	Barley	plastid	72.97	63.16
GSMUA_Achr9P27260_001	Banana	peroxisome	58.11	59.31
AT5G37670.1	Thale cress	cytosol	46.62	50.37
KRH17351	Soybean	mitochondrion	48.65	50.0
KRH72979	Soybean	cytosol, mitochondrion, peroxisome	47.97	49.31
Bra028141.1-P	Field mustard	cytosol	45.95	48.92
CDY01718	Canola	cytosol	45.95	48.92
CDY60723	Canola	cytosol	45.95	48.92
PGSC0003DMT400060736	Potato	mitochondrion	46.62	47.59
Solyc04g014480.2.1	Tomato	mitochondrion	46.62	47.59
VIT_13s0019g00860.t01	Wine grape	cytosol	44.59	46.48
EER95124	Sorghum	cytosol	38.51	36.08
KXG39718	Sorghum	cytosol	37.84	35.67
EES02532	Sorghum	cytosol	36.49	35.53
EES00359	Sorghum	cytosol	35.81	35.33
EES00358	Sorghum	cytosol	35.14	34.44
EES02531	Sorghum	cytosol	35.14	34.21
EER95120	Sorghum	cytosol	35.14	32.91
EES02535	Sorghum	cytosol	31.76	31.33
EES04437	Sorghum	mitochondrion	33.78	27.32
EES02533	Sorghum	cytosol	28.38	25.45
EES08263	Sorghum	endoplasmic reticulum	35.14	25.12
KXG26390	Sorghum	endoplasmic reticulum, extracellular, golgi	30.41	20.83

Protein Annotations

MapMan:19.1.8.10	Gene3D:2.60.40.790	EntrezGene:8065737	InterPro:A-crystallin/Hsp20_dom	UniProt:C5Z7Y8	EnsemblPlants:EER89539
ProteinID:EER89539	ProteinID:EER89539.1	GO:GO:0000302	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0005782	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF142	EnsemblPlantsGene:SORBI_3010G104300
SUPFAM:SSF49764	UniParc:UPI0001A899BA	RefSeq:XP_002438172.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:9815040..9816231

Molecular Weight (calculated)

16018.2 Da

IEP (calculated)

9.906

GRAVY (calculated)

-0.217

Length

148 amino acids

Sequence
(BLAST)

001: MADFFFGSPF RRVFHARPFF PAVEWSSGAA SAAMDWVETP ASHVLRVNVP GLGRDDVKVQ VEEGNVLTIR GAPPAAKQKG KEDEEEGTVW HVAERGKPEF
101: ARAVALPEKV RVDGIRAAVE NGVLTVVVPK EAAPARPKPR PIAVSSKL

Best Arabidopsis Sequence Match ( AT5G37670.1 )
(BLAST)

001: MADRGIFLYP FRRFQEWSRS TALIDWMESN NSHIFKINVP GYNKEDIKVQ IEEGNVLSIR GEGIKEEKKE NLVWHVAERE AFSGGGSEFL RRIELPENVK
101: VDQVKAYVEN GVLTVVVPKD TSSKSSKVRN VNITSKL

Arabidopsis Description

HSP15.715.7 kDa heat shock protein, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.